| New model in OGS2.0 | DPOGS202325 |
|---|---|
| Genomic Position | scaffold108:+ 5223-7508 |
| See gene structure | |
| CDS Length | 1506 |
| Paired RNAseq reads | 1251 |
| Single RNAseq reads | 3349 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004993 (0.0) |
| Best Drosophila hit | signal recognition particle protein 54k (0.0) |
| Best Human hit | signal recognition particle 54 kDa protein isoform 1 (0.0) |
| Best NR hit (blastp) | putative signal recognition particle 54 kDa protein [Bombyx mori] (0.0) |
| Best NR hit (blastx) | putative signal recognition particle 54 kDa protein [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0005786 signal recognition particle, endoplasmic reticulum targeting GO:0006614 SRP-dependent cotranslational protein targeting to membrane GO:0008312 7S RNA binding GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition GO:0005048 signal sequence binding GO:0017111 nucleoside-triphosphatase activity GO:0005515 protein binding GO:0005525 GTP binding GO:0007040 lysosome organization GO:0010507 negative regulation of autophagy |
| InterPro families | IPR006325 Signal recognition particle, SRP54 subunit IPR013822 Signal recognition particle, SRP54 subunit, helical bundle IPR004125 Signal recognition particle, SRP54 subunit, M-domain IPR000897 Signal recognition particle, SRP54 subunit, GTPase IPR003593 ATPase, AAA+ type, core |
| Orthology group | MCL11002 |
Nucleotide sequence:
ATGGTTTTAGCAGATTTAGGTCGAAAAATAACAACAGCTCTACAGTCTCTCAGTCGAGCA
ACTATAATCAATGAAGAGGTACTCAATTCTATGCTAAAGCAGATTTGTGCTGCTCTATTA
GAGGCTGATGTAAATATTCGTTTAGTCAAAAATCTCAGAGAAAATGTTCGAGCAGTCATT
GATTTTGACGAAATGGCGGGAGGGCTCAACAAACGACGGATGATACAGTCCGCTGTATTC
AAAGAACTGGTTAAGCTGGTAGATCCAGGTGTAAAACCTTACCAACCTGTTAAGGGAAAG
CCAAATGTCATTATGTTTGTTGGTTTACAAGGTTCTGGTAAAACTACCACCTGTACCAAA
CTTGCCTACCATTATCTAAGGAAAAACTGGAAATCATGCTTAGTTTGTGCTGATACATTC
AGAGCTGGTGCTTATGATCAGGTTAAACAGAATTGTACCAAGGCAAGAATACCATTTTAT
GGCAGTTATACTGAAGTAGATCCAGTAGTGATTGCTTCAACCGGAGTTGACATGTTCAAA
AAGGAAGGCTTTGAAATGATCATAGTGGACACCAGTGGACGACACAAGCAGGAGGAATCG
CTTTTCGAGGAGATGTTGGCAGTTGCTACAGCTATTAAACCCGACAACATAATATTTGTG
ATGGACGCGACAATTGGTCAAGCTTGTGAGTCCCAGGCCCGTGCTTTCAAGGATAAAGTA
GATATCGGTTCAGTCATCATCACCAAGTTAGATGGTCATGCTAAGGGTGGGGGTGCATTA
TCAGCTGTAGCGGCAACACAAAGTCCTATAATATTCATTGGTACTGGAGAACATATTGAT
GACTTGGAGCCATTCAAAACAAAGCCTTTCATCAATAAACTGTTGGGTATGGGAGACATT
GAGGGTCTACTTGATAAAGTCCATGAGTTAAAACTTGATGATAACGATGAGCTCTTAGAG
AAGCTGAAGCATGGTCAGTTCACATTGAGGGCCATGTATGAACAGTTTCAGAACATCATG
AAAATGGGACCATTCTCTCAGATCATGGGCATGATCCCAGGATTCTCTCAAGACTTAATG
TCGAAGGGAAGTGAACAGGAATCCATGGCAAAACTGAAACGGCTCATGACCATTATGGAC
TCTATGAATGAAGGTGAATTGGATCACCGTGATGGAGCTAAGTTATTTTCGAAGCAGCCC
ACTCGAATTACCAGGGTCGCGCAAGGTGCTGGTGTGACTGAGAGGGATGTTAAAGATCTT
ATAGCCCAGTACACTAAATTTGCGGCGGTGGTAAAGAAAATGGGCGGCATCAAAGGTTTA
TTCAAGGGTGGTGATATGGCTAAGAACGTTAACCAGACTCAAATGGCCAAGCTGAATCAA
CAGATGGCCAAGATGATGGACCCAAGGATTCTCCAACAAATGGGCGGTATGTCGGGCCTG
CACAACATGATGAGACAGTTACAACAAGGTTCGAGCGGCATGAACAGTTTAATGGGCGGC
AAATGA
Protein sequence:
MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI
DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK
LAYHYLRKNWKSCLVCADTFRAGAYDQVKQNCTKARIPFYGSYTEVDPVVIASTGVDMFK
KEGFEMIIVDTSGRHKQEESLFEEMLAVATAIKPDNIIFVMDATIGQACESQARAFKDKV
DIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFINKLLGMGDI
EGLLDKVHELKLDDNDELLEKLKHGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLM
SKGSEQESMAKLKRLMTIMDSMNEGELDHRDGAKLFSKQPTRITRVAQGAGVTERDVKDL
IAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMAKLNQQMAKMMDPRILQQMGGMSGL
HNMMRQLQQGSSGMNSLMGGK