| New model in OGS2.0 | DPOGS213718 |
|---|---|
| Genomic Position | scaffold1222:+ 20424-23902 |
| See gene structure | |
| CDS Length | 1614 |
| Paired RNAseq reads | 46 |
| Single RNAseq reads | 103 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011849 (2e-68) |
| Best Drosophila hit | CG1698 (8e-24) |
| Best Human hit | sodium-dependent serotonin transporter (4e-24) |
| Best NR hit (blastp) | sodium-neurotransmitter symporter, putative [Ixodes scapularis] (6e-33) |
| Best NR hit (blastx) | PREDICTED: sodium-dependent proline transporter-like [Xenopus (Silurana) tropicalis] (3e-35) |
| GeneOntology terms | GO:0005335 serotonin:sodium symporter activity GO:0005515 protein binding GO:0005624 membrane fraction GO:0005768 endosome GO:0005829 cytosol GO:0005886 plasma membrane GO:0005887 integral to plasma membrane GO:0006836 neurotransmitter transport GO:0006837 serotonin transport GO:0007626 locomotory behavior GO:0008504 monoamine transmembrane transporter activity GO:0009636 response to toxin GO:0010008 endosome membrane GO:0010628 positive regulation of gene expression GO:0012505 endomembrane system GO:0015222 serotonin transmembrane transporter activity GO:0015293 symporter activity GO:0015844 monoamine transport GO:0017022 myosin binding GO:0017137 Rab GTPase binding GO:0019811 cocaine binding GO:0021794 thalamus development GO:0042803 protein homodimerization activity GO:0045121 membrane raft GO:0045787 positive regulation of cell cycle GO:0050998 nitric-oxide synthase binding GO:0051015 actin filament binding GO:0051259 protein oligomerization GO:0051610 serotonin uptake |
| InterPro families | IPR000175 Sodium:neurotransmitter symporter |
| Orthology group | MCL40682 |
Nucleotide sequence:
ATGAGCGAAAGTCTGAGTAGTGTTACGAAGACAGTCACCGAGACCGTTGATACGGAATCC
ACTGAAGACAATTTGATCGTAGACCGCTGGACGAACAATATCAGTTATCGCCAGTTGGTG
ATGTCATCATGTATTGGCATCGTACAATTGTGGTGGCAACCTTACATTCACGACTTCCGA
AAATTAGTCCCCTTCCTTTTCCTCTATAACGTGTTCAGTGTATTCTTTGCCTACCCCGCT
TTCTATCTGGAGCTTGCTCTCGGTGTGGTGACAAAGAAAGGCGTTCTTAACTGCTGGGAT
TTGGCTCCTGTGGCCCGAGGTCTGGGTCTAGCGATGTTAATATTATGTACATTTACGGCG
TTGTCTCTGAGTGCTGTGAGTTCATGGTGTTTGGCGTTGGTAGTTCATTCTTTTCATTCG
TTTTTACCTTGGCTTCACTGCGCTTCAACGGCTAATCCGCCGTGTGCAGCTCGACATAGA
CCGCTACCAGCTGGTAGTGAAACCCCACCTCAGTCTTTCTTCTTTAACTTTGTTCTGAAG
TTGAAACGTGACGGACTGCACGGGGGTCTAGGCAGTATTGTATCAGAATTATCCGTTTAT
TACGTCATATCCTGGATACTGGTGTACTTCATTGCGTGCAAGAAAATCTATAGCTATTCG
AAACTGGTGCTCTTCAAGGATTCTTTAGCGTTTTTCGTTTTGGTGTGGAGTGCGTTCGGT
GTAATCAGATTGAAGGGGTCATCGCGTATGTTTTATGATTGCGATTGGAATGTTCTCTTT
GAAAGTTTTCAGATTTGGCGAGAGGCTTTGGAATTTGCATTTATTCAAATGTCGGTATCC
CAAGGCACGCTCATAATGTTGGGATCCTATTGTCCTAAACAGAAACGTATGCTTGGGAAT
ACATCAGTATTTGCTTTCGGCGTTTCTAAAATCAGTTGTTCAGCAACGGCTCTTATTCTT
GGAGGTGCCCACGGCGCTTTGAATTGGGACTATGACAATAACAGCACTCACATTGTCAAA
GGTTCTTCCGCGTCCATTATAATTTGGGCTGACTTTGTTGCAAGAGCACCTGGAAGCCAG
TTTTGGTCGATTTTGACATTTTTTACACTGTTTGTTTTGTCCGTTTGCTCAACGGCATTA
CTCGTCCAAACTATTATGTCATCTTTTACTGGTAGATCCATGAGAAAAATTAGCTGGACC
TTTCTTATTCTGTTATGTTTTCTGTTTTCATTTATTGGTATCATTACATTATGTACTCAA
GGTGGACTGTACATTTTGAATTTCCTTTTGACTTGGCCTGTAACAAAACCGCGAATTCCT
ATCGCAGCAGTCGTGGCCTTCGTAGTGACGTACCAATATGGACAGAGTACATTTTGTGAG
GATGTATTTTATGCTGTGGGGGAATACCCTTGTGTATTCCTAAGAGTCTGTTGGGCCTTG
ACACCGATTTTCCTTTTGATAACTTTTGTATCTGGCATGGCTTCGTCGCCTGTGCCCGAG
TCAGTCGCCGGCTGGTCGTTAGTGATGACGTCACTACTGCCATTGGCCGTATTAACGTTC
CTTTTCCTCGTTTATAAATTTAGAGTTCGGAATATCGTCGCTACGGAGAAGTGA
Protein sequence:
MSESLSSVTKTVTETVDTESTEDNLIVDRWTNNISYRQLVMSSCIGIVQLWWQPYIHDFR
KLVPFLFLYNVFSVFFAYPAFYLELALGVVTKKGVLNCWDLAPVARGLGLAMLILCTFTA
LSLSAVSSWCLALVVHSFHSFLPWLHCASTANPPCAARHRPLPAGSETPPQSFFFNFVLK
LKRDGLHGGLGSIVSELSVYYVISWILVYFIACKKIYSYSKLVLFKDSLAFFVLVWSAFG
VIRLKGSSRMFYDCDWNVLFESFQIWREALEFAFIQMSVSQGTLIMLGSYCPKQKRMLGN
TSVFAFGVSKISCSATALILGGAHGALNWDYDNNSTHIVKGSSASIIIWADFVARAPGSQ
FWSILTFFTLFVLSVCSTALLVQTIMSSFTGRSMRKISWTFLILLCFLFSFIGIITLCTQ
GGLYILNFLLTWPVTKPRIPIAAVVAFVVTYQYGQSTFCEDVFYAVGEYPCVFLRVCWAL
TPIFLLITFVSGMASSPVPESVAGWSLVMTSLLPLAVLTFLFLVYKFRVRNIVATEK