| New model in OGS2.0 | DPOGS208174 |
|---|---|
| Genomic Position | scaffold472:- 52232-57995 |
| See gene structure | |
| CDS Length | 1869 |
| Paired RNAseq reads | 411 |
| Single RNAseq reads | 1113 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010261 (1e-40) |
| Best Drosophila hit | Msh6 (2e-137) |
| Best Human hit | DNA mismatch repair protein Msh6 (5e-120) |
| Best NR hit (blastp) | PREDICTED: similar to DNA mismatch repair protein muts [Nasonia vitripennis] (7e-156) |
| Best NR hit (blastx) | PREDICTED: similar to DNA mismatch repair protein muts [Nasonia vitripennis] (2e-149) |
| GeneOntology terms | GO:0006281 DNA repair GO:0006301 postreplication repair GO:0005524 ATP binding GO:0030983 mismatched DNA binding GO:0000710 meiotic mismatch repair |
| InterPro families | IPR000432 DNA mismatch repair protein MutS, C-terminal domain IPR007696 DNA mismatch repair protein MutS, core IPR007861 DNA mismatch repair protein MutS, clamp IPR007860 DNA mismatch repair protein MutS, connector IPR015536 DNA mismatch repair protein MutS-homologue MSH6 |
| Orthology group | MCL14375 |
Nucleotide sequence:
ATGGGTTTCATAACAAAATATAATGAATACAATGGCGTTAGCAAGTACGGCGTTTGTTTC
GTAGATACGACGACAGGACAGTTCTACATCGGTCAGTTTGAGGATGACAAACATTCATCT
CGTCTCCTCACCACCGTTGCACATTATCCGCCAGCTTTAATTGTATTCGATCGTAAAACA
ACAAGTGCTCGTACAAGTAGACTGCTGTCAACGCATTGTCACAGCGCGAGACGTGAACCC
ACTACACTGTGGGCTCCCGAAAAGACTTTGAAGATTCTAGCTGAGAAATATTATAAAACT
GACGGCGACGGAAAATGGCCTACCGGGATTACGCCTTTCCTACACGAGGAGCAAAAATGT
CATCCGGACTCCAGAGCTATATTTTATGAAGAAAAAACTTATTCGAAGAGAAAAGTATTG
GATTTCATACTATTGTTGAACGGGTTCACGTCTATATTGAAGCTGGTTGACTTATTCTCC
GATGTGGATGCAGAGTTACTGAAGAAATTAACCCAATTTGCTCCGGAAGGCAGATTTCCT
GATTATAGAGATACTTTGAAATTTTTCAAGGAGGGTTTCAACCAACAAGAGGCGGAGAAA
GAAGGTCGTATACTACCTGGTAGCGGTGTTGACGCAGACTACGACAACACTATACAACTC
ATACAGAACATACAGGATGAATTGAAGGAATACTTGAGTGAGCAGGAGAGATACTTCAAA
TGTCGGTTAACGTATGTTGGAAGTGATAAGAAACGTTATCAAATAGAAGTTCCACAGAGC
GCAGCGGGGAAGGCAAATTCTGATTATCATCTAGAAGGTGCTAGGAAAGGATTCAAGAGA
TATTCAACAGTTGAAACAAAGGATCTGCTGGCGCGAATGATAGCCGCCGAGGAAAAGAAA
AGTAACGTACTGAAAGATCTTAGCAGACGGATGTTCGAGAAGTTCTCATCGCATCAGCAC
CAGTGGGAAATGGCCACCAAATGTGTCGCCACTATCGATATATTGTTAGCATTCACAGAG
TTCGCTAGGCAACAGACTGGGGATATCTGTCTACCGGAAATCACGTACAATAAGGACCAA
GAGCCCTACATAGACATAGTGGAGGGTCGCCACCCGTGTATTTCTATACCAGAGTTCATT
CCTAATGATACGAGGCTGGGTGTTGACAACCCTCGCCTGCTGCTGCTGACTGGTCCCAAC
ATGGGCGGCAAGTCTACACTCATGAGACAAGTCGGACTCCTCACCGTGTTAGCGCATCTG
GGCTGCCACGTACCAGCTTCAGAATGTCGTCTGAGTGTGTGTGACCGTATCTTCACCAGA
CTGGGGGCCTCGGATGATATTCTGTCCGGTCAGTCGACGTTTTTGGTTGAAATGAATGAG
ACAGCGGCCATAGTGAAGCACGCGACCAAACACTCGCTGGTACTACTGGATGAATTAGGT
CGCGGTACATCTACATACGATGGTACGTGCATCGCGTGGTCAGTATGCTGGTGGCTGGCT
GGCCGGTCGTGTCGCACGCTGTTCTCAACTCACTATCACTCGCTAGTCCATCACCTGGCT
GATCATCCCGCCGTACTTTTAGGACATATGGCGTGCATGGTAGAGACCGACGAATCTGCC
CCGGATGGTGACCATATACCGGAGGAAACGATAACCTTTTTGTACAAACTCTCCCCCGGT
GCCTGTCCGAAGTCATACGGCTTCAACGCGGCGCGGCTAGCGGGGATCCCCCGGGAAATA
ACGCAACGCGCACACACGATATCACGCAACCTGGAGAGCGAGGCGACGTGTGTACGCGCC
TTTAGAGATGTCATCAAAACGGACAACGCGGCTGAGTTGAGGAAAATATTGTCAGCCCTG
ACCATATAA
Protein sequence:
MGFITKYNEYNGVSKYGVCFVDTTTGQFYIGQFEDDKHSSRLLTTVAHYPPALIVFDRKT
TSARTSRLLSTHCHSARREPTTLWAPEKTLKILAEKYYKTDGDGKWPTGITPFLHEEQKC
HPDSRAIFYEEKTYSKRKVLDFILLLNGFTSILKLVDLFSDVDAELLKKLTQFAPEGRFP
DYRDTLKFFKEGFNQQEAEKEGRILPGSGVDADYDNTIQLIQNIQDELKEYLSEQERYFK
CRLTYVGSDKKRYQIEVPQSAAGKANSDYHLEGARKGFKRYSTVETKDLLARMIAAEEKK
SNVLKDLSRRMFEKFSSHQHQWEMATKCVATIDILLAFTEFARQQTGDICLPEITYNKDQ
EPYIDIVEGRHPCISIPEFIPNDTRLGVDNPRLLLLTGPNMGGKSTLMRQVGLLTVLAHL
GCHVPASECRLSVCDRIFTRLGASDDILSGQSTFLVEMNETAAIVKHATKHSLVLLDELG
RGTSTYDGTCIAWSVCWWLAGRSCRTLFSTHYHSLVHHLADHPAVLLGHMACMVETDESA
PDGDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPREITQRAHTISRNLESEATCVRA
FRDVIKTDNAAELRKILSALTI