| New model in OGS2.0 | DPOGS211470 |
|---|---|
| Genomic Position | scaffold33:- 258259-357695 |
| See gene structure | |
| CDS Length | 1110 |
| Paired RNAseq reads | 59 |
| Single RNAseq reads | 387 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002740 (4e-37) |
| Best Drosophila hit | CG42342, isoform C (2e-08) |
| Best Human hit | ND |
| Best NR hit (blastp) | collagen alpha-1 precursor, putative [Pediculus humanus corporis] (4e-27) |
| Best NR hit (blastx) | endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene] (9e-22) |
| GeneOntology terms | GO:0003674 molecular_function GO:0005575 cellular_component |
| InterPro families | IPR008160 Collagen triple helix repeat |
| Orthology group | MCL39692 |
Nucleotide sequence:
ATGGGGGGGAAGCCTCCGGGCAAGAGTCCTCCGGAGAAGGAAAAGGAAAAAGAGACTAAG
AAAAAATGGGAGAAATGCGAGCGCTGCCCAGCGGACCCTTGGACTTACTGTGTCGTGTTA
TGGTGTGCGTGTGCGATGAGCCTCATATCTAGTGGGTACAGTCTATACAAGCAGCAGGGT
CTACAGGGGAGGCTGTCCTTGTTGGAGGAGCAGCATCTAGCTTTACGTAGTGCGGTCCTG
GAGCCGCAGCAGCCTCTAGTGGAGCGTCTGAGGAGGGATCTTCACACGAGACCGTTGAGC
TCCTGGAGAGCCAGGAGGAGTATTAGAGACTACGGCACCTGCGTTTGTCCACCAGGTCCT
CCCGGGCCCCCCGGCAAGCGTGGCAAGAAGGGCAAGAAAGGTGACCCCGGTGACCCAGGC
CCCCCGGGGTTGATGGGAGCTCCGGGGAAAAATGGATTCCCGGGTAGCAAGGGCGATAGA
GGCGAGCGCGGCTTCATGGGCCCTATAGGACTGGACGGACCTAAAGGAGATCCGGGTCGG
CCGGGGGACAAGGGACAAAAAGGAGAACATGGCAGTCCAGGCTTTGATGTTTTCTCTGCA
GTGAAGGGAGTCAAAAGATCAGTGGACAACTATAAGATGAGCCCCTACACGACCGCAGAG
ATCATAGCCGTTAAGGCCCTGCAGGCGACGGGGCACAACATCTCAGCGCAGTCCGTCATA
CAGTTGAAGGGGGAACCTGGAGAGCCGGGACCTCCGGGACCACCCGGACCAACAGGAGCA
GAAGGTGTTGCTGGAGCAGAAGGACGCGTGGGTCCTGCGGGGACGCCCGGTCCTCCTGGA
CCAATAGGCCCTACGGGGCCTGCAGGATCTGCTGGACCGATAGGGCCCCCAGGACCAGTA
GGACATAAGGAAACTCGCTGGAAGGGCAATAAGTCTCGGAACATCGGACAGGATTACCGG
CTGATATACACTGGGTCGCCTTCAGGTAAAGCTGGTGTAGCGGTAGTGCTATCTGAAGAG
CTTCGGAATGGTTTTCTTGAAGACGACCGTCGCTGCAACTGCCTGATGCGGGTGCGGGTA
CTGAGCGAGGGAGTCATTACTAGCTTATAA
Protein sequence:
MGGKPPGKSPPEKEKEKETKKKWEKCERCPADPWTYCVVLWCACAMSLISSGYSLYKQQG
LQGRLSLLEEQHLALRSAVLEPQQPLVERLRRDLHTRPLSSWRARRSIRDYGTCVCPPGP
PGPPGKRGKKGKKGDPGDPGPPGLMGAPGKNGFPGSKGDRGERGFMGPIGLDGPKGDPGR
PGDKGQKGEHGSPGFDVFSAVKGVKRSVDNYKMSPYTTAEIIAVKALQATGHNISAQSVI
QLKGEPGEPGPPGPPGPTGAEGVAGAEGRVGPAGTPGPPGPIGPTGPAGSAGPIGPPGPV
GHKETRWKGNKSRNIGQDYRLIYTGSPSGKAGVAVVLSEELRNGFLEDDRRCNCLMRVRV
LSEGVITSL