| New model in OGS2.0 | DPOGS211056 |
|---|---|
| Genomic Position | scaffold2429:+ 137-14719 |
| See gene structure | |
| CDS Length | 4293 |
| Paired RNAseq reads | 761 |
| Single RNAseq reads | 2067 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009611 (4e-10) |
| Best Drosophila hit | slit, isoform E (0.0) |
| Best Human hit | slit homolog 2 protein precursor (0.0) |
| Best NR hit (blastp) | slit [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | slit [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0005576 extracellular region GO:0008347 glial cell migration GO:0007509 mesoderm migration GO:0050919 negative chemotaxis GO:0005578 proteinaceous extracellular matrix GO:0007411 axon guidance GO:0030182 neuron differentiation GO:0005509 calcium ion binding GO:0007427 epithelial cell migration, open tracheal system GO:0016199 axon midline choice point recognition GO:0001764 neuron migration GO:0007432 salivary gland boundary specification GO:0035050 embryonic heart tube development GO:0022409 positive regulation of cell-cell adhesion GO:0005515 protein binding |
| InterPro families | IPR003591 Leucine-rich repeat, typical subtype IPR000483 Cysteine-rich flanking region, C-terminal domain IPR000372 Leucine-rich repeat-containing N-terminal IPR001881 EGF-like calcium-binding IPR006210 Epidermal growth factor-like IPR001791 Laminin G domain IPR006207 Cystine knot, C-terminal IPR008985 Concanavalin A-like lectin/glucanase IPR000742 Epidermal growth factor-like, type 3 IPR001611 Leucine-rich repeat IPR013320 Concanavalin A-like lectin/glucanase, subgroup IPR006209 EGF IPR012679 Laminin G, subdomain 1 IPR000152 EGF-type aspartate/asparagine hydroxylation site IPR013032 EGF-like region, conserved site IPR018097 EGF-like calcium-binding, conserved site |
| Orthology group | MCL10968 |
Nucleotide sequence:
AGGGACTTAAGTCGCAACGAACTGACCGCTATCAGCAGACGGACCTTCCGAGGTCTGACC
GCGCTGAAAAGTCTACACTTGGATGGAAACCAGCTCAAGTGCATTGATGAAAAGGCGCTG
GAACATTTGAAAAGCTTGGAAGTCTTAACCCTGAATAATAATAACCTGACGTACCTATCA
CTGGAGGCGGTGTCTGTCGCTCGTCTCCACACCCTGCGACTGTCGGACAATCCGATCGTG
TGCGACTGTCGTGTCGCACGTCTGGCTGCGGCCGTACGCGCCGCTGGAATACTCGGACTG
GGAGCGAGATGTCAGGCTCCAGCAACCTTGAGAGGAGCCATGCTGACGGAGTTGGAAGCC
CAAGATTTAATATGCAACGGACCTAACTCCATAGCGGAGTGTTCGTCAGAGCCGCGCTGC
CCGCCCGCGTGCCGTTGTTCCACCGACGGCACCGTCGACTGCCGAGAGAAACTCCTCACA
GAGCTGCCCACCACCATACCGCACAGAGCCACTGAGATCCGTTTAGAACAGAACGAGATA
ACTGAAGTAGGCGCTGGCGCCTTCTCGGCTGTGAAGAGAGTCGCTCGCATCGACCTGTCC
AACAACAAGATCGCCAAGATGGCCGGCGACGCTTTCAACGGCCTAACACACCTGACTTCA
TTAGTTCTCTATGGGAACAAGATAAAAGACCTGCCATCAGGGATCTTCCACGGGCTGACA
TCGTTACAACTGCTTTTGCTCAATTCAAACGAGATAAGTTGCGTCCGTAAAGACACGTTC
AGGGACCTGCAGAGTCTAAAACTACTATCTCTCTATGACAACAACATCAGGTCGCTTCCG
AACGGAACCTTCGATTCACTCACCGGGATACAAACTTTGCACTTGGGTCGTAATCCGTTT
TCCTGCGACTGCTCGCTGCGCTGGCTGGGCGCCTACCTCCGCCGGAACCCCATCGAGACC
TCGGGCGCCAAATGCGATTCCCCCAAGAGGATGAACAGGAAACGAATCGACGCTCTGAGG
GACGAGAACTTCAAATGTAAACCCGGTGAGGAGCCTCCGGACGCGTGCGGCGACGCCCCG
CCCTGCCCCGACACGTGCGCCTGCTCGGGCGCCGGCCGCGCGCTGCGGGTGGCGTGCGCC
CGCGCAGGACTCGCCGACGTGCCCAGAGACCTGCCGCTCACAACACACGCACTGATCATG
CCGGACAACAATCTCGGTCAAATTAAATCTGACGGACTATTCGGGAGACTGCCGGACCTC
GCGAAGCTGGACCTGAGGAACAATGGTATAACAGTGATAGAGGACAACGCGTTCGACGGC
GCGGTGGCCATGAGGGAGCTCTCGCTGGATGGGAACCTGCTGCAGACTGTGGGCGACAAA
ATGTTCTTCGGACTGCACAGCCTTACTCTGCTGTCCCTGACTGATAACAAAATAAGGTGC
ATCACCCCCGGCTCCTTCGACCACCTGACGATGCTGTCGACTCTTTCGTTGGCCAACAAC
CCTATCGCGTGTAACTGTCACATGTCCTGGTTGCCGGGCTGGTTGCGAGGGCGGCGACTC
TCCTCGGGGGTGACGTGCGCCCTGCCCCTCGGCCTGCGCGGCACTGAGCTCCAACAGCTG
GAAGTGGTCGACTTCAAATGTGCCCCGGACGAGCAGGGCTGCCTCCCGGCGGACTACTGT
CCCGAGCGCTGCGCTTGCGCCGGGACCGTGGTGAGATGTGCTCGAGCCCGACTGACCTCG
CTTCCGCCGAGAATACCGCCCTACACCACGGAACTGTACTTGGAGTCCAACGAGATCACC
AGCATCTCCTCGGAGCAGGTCCGTCACTTGACGCAGCTGACGAGGCTGGACCTCTCCAAC
AACAGGATCGCAGTGCTCTCCAACAACACCTTCGAAGGTCTCAGCAAGCTCTCCACGCTC
ATCGTCAGTTACAACAGGCTGAGATGCGTTCAGCGGGACGCGCTCAAGGGTCTGACGCAG
CTCCGCGTGCTGTCTCTCCACGGCAACAACATCTCCACTCTGGCGGACGGAGTCTTCAGA
GACCTGGAATCCATCTCACACGTTGCCCTGGGGTCCAATCCCTTGTACTGCGACTGCAGC
GCGCGCTGGCTGTCCGAGTGGGTCAAAGTGTCCGGGGAGTATGTGGAGGCGGGCATCGCT
CGCTGTGTGGCCCCACCGCCCATGAGGGACAAACTGTTGCTCAGCACAGCTACGAGCGCT
TTCGTTTGTAACGGTAACCCCCCACCGGAAGTCGTGTCCAAATGCGACCGCTGCTACCGG
AACCCGTGTCTCAACCAAGGCACGTGTCGCTCCACCACATCCGGAGGCTTCGCCTGTTCC
TGTGCCCGAGGCTTCCACGGAGAAACTTGTCAGTATGAGATAGACGCGTGCTACGGCTCT
CCCTGCGCCCAGGGAACCTGCCAGCTACTAGAAGAGGGGAGGTTCCAGGCCGAAACGCTG
AGGTTACTCCAAACAACTTCCACCGAGAGCTTTTTTGTGGAGGTGCATCTCCTTGTTATT
ACAACCAAAAGCGTTGTTCCTGAGCGCTCGTGTGACCAGCTCATTTGTGCGTGTCATGCT
GGATACACAGGCGTGAGGTGTGAGGTGGACATTGACGATTGTGTCGGCCACCGCTGCAAG
AACAACGCGACCTGTGTGGACCACCTGGAGGGCTACACCTGCAAGTGCGCTCCAGGTTTC
ATGGGCGAGTTCTGCGAGAAGAAGATACCGTTCTGCACGAGCGGCTTCAACCCTTGCGCC
AACGGAGCCTCGTGCGTGGACCTCGGCAGCCACTACACGTGCGCGTGCCCCAAGGGCTAC
TCGGGACAGAACTGCACTATCAACGCGGACGACTGTATGAACCACATGTGCCAGAACGGC
GCTACTTGTATGGACGGGCTGGACGAGTACCGCTGCGCATGCGCCGCGGGGTACGCGGGC
CGGTACTGCGAGGCGGCGCCCCACGCGGCTCTGGGGACTTCGCCCTGCGCTCACCACGAC
TGTGTGCACGGAGTCTGCTATCTGCCGGCCCTGGCGCTACACGATGACATCATGATGGAG
AGACCTCTGCTGGCGCCGCCCGACTACCTCTGCAAGTGCGCGCCGGGATACTCGGGTCGG
TACTGTGAATACCTGACCTCTCTGACCTTCAACCACAACGACTCTCTCGTCGAACTGGAA
CCGCTAAGGACCTCGCCGCAAGCTAACGTCACACTCGTTTTTAGCACAAAACAGTTGCAC
GGAGTCCTCATGTACTTCGGAGACAACGAACACTTGGCCGTGGAACTGTTCAACGGAAGA
ATTAGAGTTAGCTACGACGTCGGCAACCATCCCACGTCCACCATGTACAGCTTCGAAATG
GTGTCCGACGGTAACTACCACAAAGCTGAGCTTTTGGCCATCAAGAAGAATTTCACTCTC
CGCGTCGACGACGGGCCCGCCAGGTCCATCATAAACGAAGGCAGCAACGAATTCCTGCGC
CTGGAGCGCCCGATGTTCGTGGGAGGGGTGCCGCCGGATGTCGCCAAGGACGCCTTCAGC
AAGTGGCACCTCCGAAACATAACTAGCTTCAAAGGGTGTCTCAAAGAGGCGTGGATCAAC
CACAAACGTGTCGACTTCGTGAACGCAGCTCGAGCGACTCGGACCACCGCGGGTTGCGGG
GGCGGAGGCCTAGCCGGGCCCGGGGCCGAGGAGCCCCCGGCGCCCCCGCACGCTCTCCAG
GAAGACGGCGCGCACGAACCAGACCCCTGCGTGCCGAATCCTTGCGCTCGCGGCGGGCGC
TGCGTCCGCGAGGCGGGCTCCCGGTCCGACTACACGTGTCGCTGCCGCGCCGGCACCGCG
GGGGCGCAGTGCGAGCGCCGAGCGTCTGTTGGCGGTACACCAGTCATCACTCAGTCGAAA
CTACCGCCTCGAAAACAGGTCATCAACAACAACAACGTCCAAGCATCGCCAGCTGCACCT
TCGCCGAAGCAGTATCCAGACCAAGCCTCTGCACCACAAATGCCATCAACTGCAGCCTGC
AGAAAGGAAGCGACGCGTGAATTTATAACAGAGGGCTCGTGTAGGAGCCGCAGGCCTGTC
CGAGGGGCCCGCTGTACCGCCCGGACTGTGGGGCCCGGAGACAGTGGGGGGGCCTGTCCG
CGAGCGACGTGCTGCGCTCCAAGGAAGACTAAGAAAAGGAAGATTCGACTCGTCTGCTCG
GACGGCACGCGGTACACCAAAGACATAGAGATAGTGCGGAAATGCGCCTGCGGGAAGAAA
TGTCCAGCGAGAAACACACCATTCCTACACTAG
Protein sequence:
RDLSRNELTAISRRTFRGLTALKSLHLDGNQLKCIDEKALEHLKSLEVLTLNNNNLTYLS
LEAVSVARLHTLRLSDNPIVCDCRVARLAAAVRAAGILGLGARCQAPATLRGAMLTELEA
QDLICNGPNSIAECSSEPRCPPACRCSTDGTVDCREKLLTELPTTIPHRATEIRLEQNEI
TEVGAGAFSAVKRVARIDLSNNKIAKMAGDAFNGLTHLTSLVLYGNKIKDLPSGIFHGLT
SLQLLLLNSNEISCVRKDTFRDLQSLKLLSLYDNNIRSLPNGTFDSLTGIQTLHLGRNPF
SCDCSLRWLGAYLRRNPIETSGAKCDSPKRMNRKRIDALRDENFKCKPGEEPPDACGDAP
PCPDTCACSGAGRALRVACARAGLADVPRDLPLTTHALIMPDNNLGQIKSDGLFGRLPDL
AKLDLRNNGITVIEDNAFDGAVAMRELSLDGNLLQTVGDKMFFGLHSLTLLSLTDNKIRC
ITPGSFDHLTMLSTLSLANNPIACNCHMSWLPGWLRGRRLSSGVTCALPLGLRGTELQQL
EVVDFKCAPDEQGCLPADYCPERCACAGTVVRCARARLTSLPPRIPPYTTELYLESNEIT
SISSEQVRHLTQLTRLDLSNNRIAVLSNNTFEGLSKLSTLIVSYNRLRCVQRDALKGLTQ
LRVLSLHGNNISTLADGVFRDLESISHVALGSNPLYCDCSARWLSEWVKVSGEYVEAGIA
RCVAPPPMRDKLLLSTATSAFVCNGNPPPEVVSKCDRCYRNPCLNQGTCRSTTSGGFACS
CARGFHGETCQYEIDACYGSPCAQGTCQLLEEGRFQAETLRLLQTTSTESFFVEVHLLVI
TTKSVVPERSCDQLICACHAGYTGVRCEVDIDDCVGHRCKNNATCVDHLEGYTCKCAPGF
MGEFCEKKIPFCTSGFNPCANGASCVDLGSHYTCACPKGYSGQNCTINADDCMNHMCQNG
ATCMDGLDEYRCACAAGYAGRYCEAAPHAALGTSPCAHHDCVHGVCYLPALALHDDIMME
RPLLAPPDYLCKCAPGYSGRYCEYLTSLTFNHNDSLVELEPLRTSPQANVTLVFSTKQLH
GVLMYFGDNEHLAVELFNGRIRVSYDVGNHPTSTMYSFEMVSDGNYHKAELLAIKKNFTL
RVDDGPARSIINEGSNEFLRLERPMFVGGVPPDVAKDAFSKWHLRNITSFKGCLKEAWIN
HKRVDFVNAARATRTTAGCGGGGLAGPGAEEPPAPPHALQEDGAHEPDPCVPNPCARGGR
CVREAGSRSDYTCRCRAGTAGAQCERRASVGGTPVITQSKLPPRKQVINNNNVQASPAAP
SPKQYPDQASAPQMPSTAACRKEATREFITEGSCRSRRPVRGARCTARTVGPGDSGGACP
RATCCAPRKTKKRKIRLVCSDGTRYTKDIEIVRKCACGKKCPARNTPFLH