| New model in OGS2.0 | DPOGS210872 |
|---|---|
| Genomic Position | scaffold488:+ 26032-152454 |
| See gene structure | |
| CDS Length | 2499 |
| Paired RNAseq reads | 684 |
| Single RNAseq reads | 1831 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006997 (5e-26) |
| Best Drosophila hit | CG5626 (7e-16) |
| Best Human hit | tRNA-splicing endonuclease subunit Sen54 (3e-11) |
| Best NR hit (blastp) | PREDICTED: tRNA splicing endonuclease 54 homolog [Saccoglossus kowalevskii] (6e-22) |
| Best NR hit (blastx) | PREDICTED: tRNA splicing endonuclease 54 homolog [Saccoglossus kowalevskii] (1e-20) |
| GeneOntology terms | GO:0004017 adenylate kinase activity GO:0000213 tRNA-intron endonuclease activity GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation |
| InterPro families | ND |
| Orthology group | MCL30305 |
Nucleotide sequence:
ATGACCACTTGTTGCTGCACCGATATCTTCTATCCCATTATGCAAGGCTTCGGAACAAGG
GTCACCGACGCCAGAATATTATGGGAAGCTTTGGTGCGGATTGAACGCGCGTGCGCAGTC
ACTAACGACAAGTCTGGTTGTGAGTTAGTTCAGAGAGGTACTACAAAAATTGACGCCACA
TTACCTGAGCTGGGTGTCAAAGAGGTGACTCCAAATGGAACTTGGTTGGAGCAAAAACAG
ATACAGGCAGCTATAGAAGCTAGAAAAAAATTGATCGAAATACAACGTATCGAAAAAAAA
GGAGCCATGAGTCATGCGGTATGGAAAGATAATTTAAAGCTTGCCGAAGTTACCCATAAA
GTGGGTGGTCATTGGCAACACATGGGACACAACATAGGAAAGCAACTTTATATTAGAGCC
GAAGAAATTTTATTTTTGATGGAACTTAATTGTCTATATTTCAAATTCAATGATGTGGTT
GTGTCTCTACAGCAGGCATACTCTTTGTTTCTTGGACCACTAATATCACATCAACAGTAC
AAAGTTTATGCGTCACTCAGCCGTCTCGGATACCGTGTGTATAGGCATGAAACATCAGAC
AAAGAGATACATAATCCCAGTACTAGTAATAATGTTAACAAAGTCAATATTGGTAGCTCG
GAAGCGAGTTGTTCGGTTGGGAATCCAACTATGGTAAACATTAAATTGGAAAGAATGGAT
GAATATGAAAATATACAAATCAAACAAGAACCGGACACAGAAGAATATAACGCAGGTGAC
GTAAACCATGGTATATTAAGCGTACCTATAAAGAAGGAATTTCCACAATCAGATAGTGAT
ATGGAAACGAGCGCTTCAAACTCAATACAGGGCAGTAGCCAAGATAAATCAGATAATATG
TGCTGCAAAATAAAACTTAAGAATTTGAAAAGCAGAAAGCTTAAACCGTGCAGCGGAAAA
GTTTTACATAAGTATTTTAATAACCTCCCCGAGCTTATAGGAACATCAACGGTTATCGTT
AAGAAACCAAATATTATGTATTTACCTATAAACGTTATATTGAAGAGAGTAGAGTATACT
GTCAATTTATTAAACATAAGGGAAAAGGGCGAGAGGACGGACGTGACGGAAACAAATATA
TACAATGAAGGGGATGAGGTGAATGGAAGTCATGTGAGAAGGTTGAGGAGCTCAGCGAGC
AGATCCGATACTGATGGTACGGGGCAATCCAATATGAGGTTCCCGTCACAGAACCCACAA
TACCGACCATACAACATGTGGAGAGACCGTCATAGCTTCAACTATTTCAACTTCAACATG
TTCTTCCAAAGAAACTTCTCCCCGCCCTGGTACACAAACAGCAATTGTCAATTCACACCA
AGAAACCACGCCTACCCTCGCCCGACACTGAGCGTACACAACCGCATCACGCCCCAAACC
AGGAAGAGACCAAAAAATAACACACAAAAACAACATTTAGATGGTATTAAAAAACTTAGT
GCCAAATTAAAGTTACTACTACAAAAAGGAAACATGGACCCAGTGAATATACAGTCGCTG
CAAAGACTTATTCATCTTTACAACAGGCGTTACAAGGCAAGAATGAGGATAAGTCCGGAC
TTTGATATCGTCGACGAAAACGTATTGGACACCATCGACCTAGACGATGAGGAGCCGGCG
GAGAAGAGGCGCAGAAACAATGACGACCAAGCGTACAAAGAAAATCTGGAACAGCTAAAA
CAACTGGCATCCAAACTAAAGAGTTTAGAGGAAAACAAGAAGTCATCTGCCAGACACCGA
AGGGCTTTATCAAAGCTATTGAAAGTGTTCAACGAGTCTTATAAAGAGGAATATTATCTA
TCGGAAGAGCACGAAATCAAAAATCCAAGACATATAACTCTTGATACGTCAGAATCGGAA
TCGGACGTATTAATGAACGAAGACACTCCGAATCGCTCCAAAGGGAAAAAGGTCAAGAAT
CCGTTCAACATATTGAAGAGACTCACGGAGAAACAGAAAGATGGGAATACATCATCCACG
AGCGACGATTGCGATGTACAGGAGTGTAAGAAGTATAGTGACGTGCTAGCCAAGACGTTT
TCTAAAGGTTGGCTGCCGAGGGAGGATGATTTTGGTAGAGCCGAAGTTGTTAAGAAAGAT
TCCATAAACATGGCTTGTAATCACGACGAAAAAGATCTGAGGAGAGAGGAATTCATAAGA
GATGACAGTCTCAATGATGAATGCAATCTTAAGATTGATTTCGATGTTTACAACCGAGAT
GTTCAAAACTTCAGGAAGACCAATCGCCCAACACCACATTTTCGTTTAATTGCCCTCGAT
GAATCATCAACCATACCATCCGGACAGGAAATAGCTACACTGGCATCTAAATACAATGAC
GATGTTGCCATCATATTTGCTGTAGTGGGCATGAATTCCATCGGTTTCATACAAATCAAG
CCGACGGTGTTGCCAGTGTTCCTTCCAAATGAATCTTAA
Protein sequence:
MTTCCCTDIFYPIMQGFGTRVTDARILWEALVRIERACAVTNDKSGCELVQRGTTKIDAT
LPELGVKEVTPNGTWLEQKQIQAAIEARKKLIEIQRIEKKGAMSHAVWKDNLKLAEVTHK
VGGHWQHMGHNIGKQLYIRAEEILFLMELNCLYFKFNDVVVSLQQAYSLFLGPLISHQQY
KVYASLSRLGYRVYRHETSDKEIHNPSTSNNVNKVNIGSSEASCSVGNPTMVNIKLERMD
EYENIQIKQEPDTEEYNAGDVNHGILSVPIKKEFPQSDSDMETSASNSIQGSSQDKSDNM
CCKIKLKNLKSRKLKPCSGKVLHKYFNNLPELIGTSTVIVKKPNIMYLPINVILKRVEYT
VNLLNIREKGERTDVTETNIYNEGDEVNGSHVRRLRSSASRSDTDGTGQSNMRFPSQNPQ
YRPYNMWRDRHSFNYFNFNMFFQRNFSPPWYTNSNCQFTPRNHAYPRPTLSVHNRITPQT
RKRPKNNTQKQHLDGIKKLSAKLKLLLQKGNMDPVNIQSLQRLIHLYNRRYKARMRISPD
FDIVDENVLDTIDLDDEEPAEKRRRNNDDQAYKENLEQLKQLASKLKSLEENKKSSARHR
RALSKLLKVFNESYKEEYYLSEEHEIKNPRHITLDTSESESDVLMNEDTPNRSKGKKVKN
PFNILKRLTEKQKDGNTSSTSDDCDVQECKKYSDVLAKTFSKGWLPREDDFGRAEVVKKD
SINMACNHDEKDLRREEFIRDDSLNDECNLKIDFDVYNRDVQNFRKTNRPTPHFRLIALD
ESSTIPSGQEIATLASKYNDDVAIIFAVVGMNSIGFIQIKPTVLPVFLPNES