| Genomic Position | scaffold440:+ 40961-54042 |
|---|---|
| See gene structure | |
| CDS Length | 2322 |
| Paired RNAseq reads | 3228 |
| Single RNAseq reads | 8428 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001926 (2e-79) |
| Best Drosophila hit | farnesyl pyrophosphate synthase (8e-102) |
| Best Human hit | farnesyl pyrophosphate synthase isoform b (2e-70) |
| Best NR hit (blastp) | dimethylallyltransferase; farnesyl pyrophosphate synthase [Agrotis ipsilon] (0.0) |
| Best NR hit (blastx) | putative farnesyl diphosphate synthase [Choristoneura fumiferana] (0.0) |
| GeneOntology terms | GO:0004337 geranyltranstransferase activity GO:0004161 dimethylallyltranstransferase activity GO:0045337 farnesyl diphosphate biosynthetic process GO:0008299 isoprenoid biosynthetic process GO:0008354 germ cell migration |
| InterPro families | IPR008949 Terpenoid synthase IPR000092 Polyprenyl synthetase |
| Orthology group | MCL10533 |
Nucleotide sequence:
ATGTTTTCTACAAGGAAGAGTGTAGACAAGTTTTTCCAAGCTTACAAGAATGAACTTCGT
CGTCAAATAAGCAAAACAACTAGTGTTACTAACTCAGATTCTATGGCACCAAGATTGGAT
CAGACTAATAAGGCTACCAACGAAGAAGCAGGACAGAAACGTTTGCTGAAGTTGCAGAAA
TATCACAGATACCTGTCCACCCTCACGTCTCAGCAAATGCCACTGGCCGCCCGTGGACTG
GCGGTGTCCAAAGACCAGTCCCGGGAATTCATGGCTTGCTTTCCGGACATCGTGAGGGAG
CTCACTGAAACTGGCAAGCATATTGACGTGCCGGAAGCCAGCAAGTGGTTGGCTAAGCTT
CTTCAATACAATGTACCAAACGGCAAGAAGAACCGCGGGCTGGCGACTGTCTTAGCCTAC
AAGATGCTGGAGAAACCTGATAGATTGACCCCAGAAAATATCCACCTAGCTAACATCATG
GGATGGTGTACGGAAATGTTCCACACACACCAACTCCTGCTGAACGACATAATGTCTGGT
ACTGAGATGCGCCGCGGCGTCCCGTGTTGGTATCGTCAAACAAACGTCGGTATGGCCGCC
ATCAACGACTCGTCATTAGTACAGTCGGCGATGTACTCGACGCTGAAAAGAAACTTCATC
AACAAACCATATTATAAGAACGTACTGGAAATGTTCAACGAGATGCTGTTGAAATGTTCA
ATCGGTAATTACTTGGAGAAGCAAATAATGAAGACGGATAAGCCGGACCTAAGCTTATTC
ACAATGGAAAAATATGAAGCTATCACTAAATACAAAACGTCATACTACACCTTCCAAATG
CCGGTCGGCTTAGCGCTTCTGATGGCGGGGGTCGACGATCCGGAGACACACAGACAAGCA
AAAACTATTCTACTAGAAATGGGAGAATTCTTCCAAATTCAAGACGACTTCCTAGATTGT
TTCGGCGAGCCGTCAGTTATAGGTAAAAATGGTACAGATATTCAAGACGGCAAATGCACC
TGGTTAGCTGTGGTGGCGTTACAGAGGGCGACACCGGCGCAGAAGCAGTTAATGGAAGAT
CACTACGGCAGTTCGAATATAGAAGACGTTCAGAAGATAAAGGATCTATACGAGGAACTA
CAACTGCCTCACACTTACTCAGTATACGAAGAAGCCACATACGACCTCCTCAGAACACAG
ATACAGCAAGTCACTAGAGGGCTACCTCACGATTTTATACCAGGACAGCATATAGCTAAA
ATGGCTACGAACGCGTCTGTATCAGAAATGGAGAAAGAGAGGGAATTGTTTTTAGACGTC
TTCCCAAGTATTATGGACACACTGGTAACAAAGACCAAGTTTTCTCATGTACCACATGTC
GCTAATTGGACCAAGAAGGTACTTGAATACAATTTGCAAGGTGGTAAGAAGAATCGTGGA
CTTTCGGCTGCTCTTGCTTACGAGATGCTAGAAGATCCGGAGAAAATAACAGAGGAAAAG
CTCAAAATCAGCAGAGTGTTGGGCTGGTGTGTTGAAATGCTGCAATCGTATCTGGTGGTT
GTGGATGACATGATGGACGGCGCCACCAAACGCCGCGGCATTCCATGCTGGTATTGTTTA
CCTAACGTGGGACTTGGGGCTATTAACGACTCCATTTTGATATATTCAGCATTAAAAGAG
ATATTGGCTGCACATTGTAAACATTTGCCTCAATACGAGCTCATAGTAAATGAGTACGAT
GAGGCGTTGTTATACACAACTATGGGTCAACACTTGGACTTTGAAATGGCTCACAGGCAC
AAAAAGGACTACAGTCTGTTCACAACAGAGAAATATAACTCTATAGCGAAGTTTAAGACC
GCGTACTATACGTACAAGCTTCCTGTTTGTTTGGGATTATTATTGGCAAATAAGACAGAT
CCCGAAACTCACAAGAGGGCTGAGAGTATATGTATTGATATAGGACTTTTGTTCCAAATG
CAGGATGACTTCATAGACTGCTTTGGAGTTGAGACATTGACTGGTAAGATTGGTAACGAC
ATCCAAGAAGGTAAGTGTTCTTGGCTGGCGGTCCAAGCACTACAACACTGCAGCCAAAAA
CAGAGGACTGTGTTCGTGTCGTGCTACGGCAGCCCAGAACCGGCCCATATAGAGAGAATT
AAGAGATTATATGAAGAATTAGAACTGCCAGCATTATATCACAGGACTGAGAAACATTTG
TATGACACGATCATCAAGAATCTAGAACAGTTACCGCCCGACAGCATGTCACCAAAGTTA
TTTGTTAAGCTGCTTGACCTTATTTATGATAGGAAGAACTGA
Protein sequence:
MFSTRKSVDKFFQAYKNELRRQISKTTSVTNSDSMAPRLDQTNKATNEEAGQKRLLKLQK
YHRYLSTLTSQQMPLAARGLAVSKDQSREFMACFPDIVRELTETGKHIDVPEASKWLAKL
LQYNVPNGKKNRGLATVLAYKMLEKPDRLTPENIHLANIMGWCTEMFHTHQLLLNDIMSG
TEMRRGVPCWYRQTNVGMAAINDSSLVQSAMYSTLKRNFINKPYYKNVLEMFNEMLLKCS
IGNYLEKQIMKTDKPDLSLFTMEKYEAITKYKTSYYTFQMPVGLALLMAGVDDPETHRQA
KTILLEMGEFFQIQDDFLDCFGEPSVIGKNGTDIQDGKCTWLAVVALQRATPAQKQLMED
HYGSSNIEDVQKIKDLYEELQLPHTYSVYEEATYDLLRTQIQQVTRGLPHDFIPGQHIAK
MATNASVSEMEKERELFLDVFPSIMDTLVTKTKFSHVPHVANWTKKVLEYNLQGGKKNRG
LSAALAYEMLEDPEKITEEKLKISRVLGWCVEMLQSYLVVVDDMMDGATKRRGIPCWYCL
PNVGLGAINDSILIYSALKEILAAHCKHLPQYELIVNEYDEALLYTTMGQHLDFEMAHRH
KKDYSLFTTEKYNSIAKFKTAYYTYKLPVCLGLLLANKTDPETHKRAESICIDIGLLFQM
QDDFIDCFGVETLTGKIGNDIQEGKCSWLAVQALQHCSQKQRTVFVSCYGSPEPAHIERI
KRLYEELELPALYHRTEKHLYDTIIKNLEQLPPDSMSPKLFVKLLDLIYDRKN