| New model in OGS2.0 | DPOGS215987 |
|---|---|
| Genomic Position | scaffold343:+ 59367-61213 |
| See gene structure | |
| CDS Length | 900 |
| Paired RNAseq reads | 84 |
| Single RNAseq reads | 328 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000931 (7e-134) |
| Best Drosophila hit | Pop2, isoform A (5e-112) |
| Best Human hit | CCR4-NOT transcription complex subunit 7 isoform 1 (1e-104) |
| Best NR hit (blastp) | ccr4-associated factor [Aedes aegypti] (2e-120) |
| Best NR hit (blastx) | ccr4-associated factor [Aedes aegypti] (1e-118) |
| GeneOntology terms | GO:0005634 nucleus GO:0016251 general RNA polymerase II transcription factor activity GO:0006357 regulation of transcription from RNA polymerase II promoter GO:0003676 nucleic acid binding GO:0005737 cytoplasm GO:0048666 neuron development GO:0007517 muscle organ development GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening |
| InterPro families | IPR006941 Ribonuclease CAF1 IPR012337 Ribonuclease H-like |
| Orthology group | ND |
Nucleotide sequence:
ATGACTTTGCAAATGCCGGCTGTTAACTTTGATTTATTGAAGTCTAAAACCTATAGAGAA
GAAAATCACTTTATTAAAAATGTTTGGAAGCATAACTTACACGAGGAGTTTCATCTTATT
AGACAGATTGTACAGAAGTATCAATGGGTTGCAATGGACACAGAGTTTCCAGGAGTAGTT
GCTAGGCCGATAGGTGAATTTCGTTCTACTGCGGACTACCAATATCAACTTTTAAGATGC
AATGTAGATCTCCTGCGAATAATACAATTAGGACTTACTTTTATGGATGAAAATGGTAAA
ACGCCTCCAGGTTGCACTACATGGCAATTTAATTTTAAATTCAATTTACAATCTCTTAAA
AACAGGGAAGATATGTATGCTCAAGATTCCATTGATCTGCTTCAAAATTCTGGATTACAA
TTTAGAGAGCATGAGGAACATGGGATAGAACCCATTGAATTTGCAGAACTATTGATTACC
TCAGGAATAGTTTTAATGGATAACATAAATTGGTTAAGTTTTCATTCTGGGTATGACTTT
GGCTATTTGCTAAAATTGCTCACTGATCAAAACTTACCCCAAGAGGAAAGTGACTTCTTT
GAAAGTCTTAAACTATATTTTCCTACAGTTTATGATGTTAAATACCTTATGAAATTATGT
AAAAACCTAAAAGGTGGATTGCAAGAGGTAGCCGATCAATTGGAGTTGAGGAGGGTGGGA
CCACAACACCAGGCTGGTTCCGATTCCCATCTAACTGGGATGGCATTTTTCAAAATAAAA
GAGATTTTCTTTGATGGCAAGATTGAGAGTACCAGTGGACACCTTTATGGTTTAGGAGCA
CCATCTTCCCCCATCAATAATATTGTCCAAGAATGTGTTGAAAACGGAAGCTCACCTTAA
Protein sequence:
MTLQMPAVNFDLLKSKTYREENHFIKNVWKHNLHEEFHLIRQIVQKYQWVAMDTEFPGVV
ARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGCTTWQFNFKFNLQSLK
NREDMYAQDSIDLLQNSGLQFREHEEHGIEPIEFAELLITSGIVLMDNINWLSFHSGYDF
GYLLKLLTDQNLPQEESDFFESLKLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVG
PQHQAGSDSHLTGMAFFKIKEIFFDGKIESTSGHLYGLGAPSSPINNIVQECVENGSSP