| New model in OGS2.0 | DPOGS201668 |
|---|---|
| Genomic Position | scaffold85:- 15904-65597 |
| See gene structure | |
| CDS Length | 2784 |
| Paired RNAseq reads | 2053 |
| Single RNAseq reads | 5385 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005348 (0.0) |
| Best Drosophila hit | short gastrulation (4e-167) |
| Best Human hit | chordin precursor (2e-61) |
| Best NR hit (blastp) | chordin [Culex quinquefasciatus] (0.0) |
| Best NR hit (blastx) | chordin [Culex quinquefasciatus] (1e-178) |
| GeneOntology terms | GO:0007378 amnioserosa formation GO:0007362 terminal region determination GO:0008293 torso signaling pathway GO:0005886 plasma membrane GO:0007398 ectoderm development GO:0008083 growth factor activity GO:0016021 integral to membrane GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway GO:0030509 BMP signaling pathway GO:0007354 zygotic determination of anterior/posterior axis, embryo GO:0030510 regulation of BMP signaling pathway GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway GO:0035271 ring gland development GO:0008586 imaginal disc-derived wing vein morphogenesis GO:0007313 maternal specification of dorsal/ventral axis, oocyte, soma encoded |
| InterPro families | IPR001007 von Willebrand factor, type C IPR010895 CHRD IPR016353 Chordin |
| Orthology group | MCL16188 |
Nucleotide sequence:
ATGCTGCCTGCGCTGGTGTTGCTAGTGCTGCTGGCGCTGGCCCCAGCCGGGCCCGCCGCA
GCACGTCGGCACGCGCCCGACTTGCGTGAGGACGAACCCGCACGTCGCACCACTCGACCT
GCTGAATGTCAGTTTGGCAAACAAGCGAAAGAGTTAGGGTCCACATGGTTCGCGGACCTG
GGTCCTCCTTTCGGTGTGATGTACTGCATCAAATGTGAGTGTATACCGGTCCAAAAGAAA
CGTCGCGTGGTAGCTAAGGTCCAGTGTCGAAATATTAAGAATGAGTGCCCGGAACCGTCT
TGTGACACTCCGACTCTGTTGCCCGGGAGGTGCTGCAAGACCTGTCCAGGAGATATCAAC
TCACCAGACATTGTGCAAGATGATGGTCCTATATCTATAATAACCAACAATGAAGACGAG
GAATTGAGTATGAGACATTTTGGGGCCTTATTAACTGGTCGATCTCCGCTATGCATCAGA
CGAGATGATATGACGGGAGTTCCTGTGGCTTCAGGTGTGGCAACTGCAAGGTTTACTTTT
CGACGTCGCCATCTATTTTGGTCTGTTATATTAGGGACGTCTGTTAGCATCCAGCCACGT
GCCTTGGCTTTTCTTGACAGAGGAGGACGTATGCTACTTGAACATCCAATAAAAAGAGCT
ACAGGAATACATGCCACTTACGAGGAAAAAACTGATAAGTTGTGTGGTGTCTGGCGTCGA
GTGCCTCGTGAATACAAACGAATATTGAGAGAAGGCTCTTTGTATGTCGCTTTGATTTGG
GGTGACGAGCGTAACAATTCTATGGAAAGTGCATTGAGTGGACGAATAAATAGATATCCA
GCACTAGCGACAGAAATGTTTACGTCTTTGCTGGAACCGGATCATGTTCCAACGTCATTT
AGCAGTGGTCCATGTGATGAGTTTCGGGTACCCGGTAAAGAAGAGGGTTGGTGGGGAGGA
ACTGCTGTTGTAACTGGCGCTGCTGGTGCCGCCCCAAGTTTGCATTTGGCGATTGTATAT
AATGGTGTCTTCATGCCTGCGGCAAGAGATCAGTCAGTCAGAGTACTATTGACTTTGCCT
GATAGAAATCAGACCATTATTGATGAAGTCCAAAAGATAAGTAAACCGGGGTACGAATTG
AATGTTCTAGAAGTATCCACACCTGTTTCCGCTGCGGAGTTGCGTTCTTTATCACGTGGA
AGATTACTATTGTCAGTAGAAGCAATGGGAACACCAGACAGAAGAATTTCTGGTATTGTC
AGACAGAGAGCTGCTTGTGAAGTCTTCCACGCTCCGTTAATCGCGGAAAGATTACCAGCT
GCATTGATACCGCAGGGATTGGCCTTAGTTTATATTGACAAAGATGGATCTCTTGTATAC
GATATACAGGTAGAGAATTTGAGTATAATCGACCCAAAGATCACATTGGTCGAAGAGCAA
GGTAAACGTCATTCGCAAGTGGAGATATTAGATACTAGGATGGGAATTCTAGCTCGACCC
AGTGCCCGTATCTTCCCTCCACTTTATGAAGATCAGCTTGCAGTACATATTGGTTCTGAT
ACAGGTCCGCCAATCCTGAGAGGTCGTTTACTGTCACGGCCACTGCCAGATGCGGCTAGT
GAAGGGCCGTCATTACTACGGCGAACAGATGCTCGAATGCCACCAACTATAAACCCAGTA
GCTGGACTTGCTTGGATTGCTATTGACGTTTTGTGCGGATTAAATTATGAGGTTGTTGTA
AATGGTTACGCTGGTTCTTGGACTGCATGGCTGGAAGGGAATCCTAATGGACCAAGAATA
TTACCTGGGATAGAGGGTTCAATTCTGGAACCATCTCCTTCAGAACTACTGGCGTTGAAT
TCTGGATCAGCACATCTTAATATTCGAACTTCCGACAACGATACTGAGTTTCTACGAACG
CGGTTACCCCAGATAAGCGTGCCACCTTCATGTCTACCAGCAGGGTCGTATTCTGACAAT
GAGTTAAATTCCAACTACGCACAAACACATATGAATTCGCCTCCACCAGACAATTCGTTA
TCTAACACAGCTTCTTGTTATTATGCCGGAAAGTCCTATGAAGATGGGTCACAGTGGATG
GCTGCAGAGTCATGTCACATGTGTGGGTGTGTTCATGGCGCGCTGCGTTGTGACGCGGTC
CGCTGTCCCCCGGTCACCTGTGCTGTTCCCACTCTGCGTCCTCCAGGACAATGTTGTCCA
ATTTGCACCAACTCAACTAAAGCCGTATGGAATGAGTCCCATGGTTGTCACCTTGCTGGA
CAGTACCACGCACCCGGTTCCTCCTGGCATCCTTACTTAGTACCTGGAGGTTACGACACT
TGTGCGATATGTACGTGTGAGTTCGCAACACGACAAGTACGCTGTCCACGTGTTCGATGT
CCGCCTTTGAAATGTGCTGAGAAGGATGCCTACCGACCCGATAAGAAGGCTTGCTGTAGA
GTTTGTCCCGAAGTAAAAGCGAAAAAGACGGAAGAAGATACACCAAGAGACCAAGGTACG
CCTCGGACAGCTGAAGAGATTTTAGCTGAAGGTGGATGCAAGTTTCCGGATGGTCCCTTG
CCCAATGGCAAAGAGGTGCATCCATCCATTCACTCCCATGGCGAGCAGAGATGCGTAACT
TGCCGGTGCAAGGATGGCGAAGTGACGTGCATTCGTAAGAGATGTTCACGGGCGGCGTGT
GCACGGCGGCGACGCGGCGACGCGTGCTGCGCTTGCGCAAGACACCGCCGCCAGCGCGCC
CCACCTCCCCCGCCACCAAGTTGA
Protein sequence:
MLPALVLLVLLALAPAGPAAARRHAPDLREDEPARRTTRPAECQFGKQAKELGSTWFADL
GPPFGVMYCIKCECIPVQKKRRVVAKVQCRNIKNECPEPSCDTPTLLPGRCCKTCPGDIN
SPDIVQDDGPISIITNNEDEELSMRHFGALLTGRSPLCIRRDDMTGVPVASGVATARFTF
RRRHLFWSVILGTSVSIQPRALAFLDRGGRMLLEHPIKRATGIHATYEEKTDKLCGVWRR
VPREYKRILREGSLYVALIWGDERNNSMESALSGRINRYPALATEMFTSLLEPDHVPTSF
SSGPCDEFRVPGKEEGWWGGTAVVTGAAGAAPSLHLAIVYNGVFMPAARDQSVRVLLTLP
DRNQTIIDEVQKISKPGYELNVLEVSTPVSAAELRSLSRGRLLLSVEAMGTPDRRISGIV
RQRAACEVFHAPLIAERLPAALIPQGLALVYIDKDGSLVYDIQVENLSIIDPKITLVEEQ
GKRHSQVEILDTRMGILARPSARIFPPLYEDQLAVHIGSDTGPPILRGRLLSRPLPDAAS
EGPSLLRRTDARMPPTINPVAGLAWIAIDVLCGLNYEVVVNGYAGSWTAWLEGNPNGPRI
LPGIEGSILEPSPSELLALNSGSAHLNIRTSDNDTEFLRTRLPQISVPPSCLPAGSYSDN
ELNSNYAQTHMNSPPPDNSLSNTASCYYAGKSYEDGSQWMAAESCHMCGCVHGALRCDAV
RCPPVTCAVPTLRPPGQCCPICTNSTKAVWNESHGCHLAGQYHAPGSSWHPYLVPGGYDT
CAICTCEFATRQVRCPRVRCPPLKCAEKDAYRPDKKACCRVCPEVKAKKTEEDTPRDQGT
PRTAEEILAEGGCKFPDGPLPNGKEVHPSIHSHGEQRCVTCRCKDGEVTCIRKRCSRAAC
ARRRRGDACCACARHRRQRAPPPPPPS