New model in OGS2.0 | DPOGS213476  |
---|---|
Genomic Position | scaffold1949:- 22007-23826 |
See gene structure | |
CDS Length | 441 |
Paired RNAseq reads   | 866 |
Single RNAseq reads   | 2567 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004501 (7e-58) |
Best Drosophila hit   | elongin C, isoform B (4e-55) |
Best Human hit | transcription elongation factor B polypeptide 1 (4e-55) |
Best NR hit (blastp)   | transcription elongation factor B polypeptide 1 [Bombyx mori] (4e-60) |
Best NR hit (blastx)   | transcription elongation factor B polypeptide 1 [Bombyx mori] (2e-60) |
GeneOntology terms    | GO:0006511 ubiquitin-dependent protein catabolic process GO:0005515 protein binding GO:0005575 cellular_component |
InterPro families    | IPR011333 BTB/POZ fold IPR001232 SKP1 component IPR016073 SKP1 component, POZ |
Orthology group | MCL15286 |
Nucleotide sequence:
ATGTCTGAACAGAATGTTGGGTCGGTGCCTGCTTCAGCGGCTTCATCTGGCACCAACGTG
GCCGAAGAACAACGGTCACCGAGCACTGCCGCCGGCTCCGGAAGTGTATCTGAAGAGAAG
GTGTACGGCGGGTGCGAGGGTCCGGACGCTATGTACGTCAAACTGGTCTCCTCGGACGGC
CACGAGTTCATCGTGAAGAGAGAACACGCGCTCACCTCGGGAACTATAAAGGCCATGCTG
AGCGGACCGGGACAGTTCGCCGAGAACGAGGCCAATGAGGTCAACTTCAGAGAAATACCC
TCCCACGTGCTGCAGAAGGTGTGTATGTATTTCACGTACAAGGTGCGCTACACAAATTCT
TCTACAGAAATACCGGAATTCCCCATCGCACCGGAAATAGCCCTCGAGCTGCTCATGGCC
GCCAACTTCCTGGACTGTTAA
Protein sequence:
MSEQNVGSVPASAASSGTNVAEEQRSPSTAAGSGSVSEEKVYGGCEGPDAMYVKLVSSDG
HEFIVKREHALTSGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFTYKVRYTNS
STEIPEFPIAPEIALELLMAANFLDC