| New model in OGS2.0 | DPOGS200982 |
|---|---|
| Genomic Position | scaffold497:- 52963-63301 |
| See gene structure | |
| CDS Length | 3585 |
| Paired RNAseq reads | 22539 |
| Single RNAseq reads | 57061 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009049 (0.0) |
| Best Drosophila hit | Niemann-Pick type C-1a (0.0) |
| Best Human hit | Niemann-Pick C1 protein precursor (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to Niemann-Pick Type C-1 CG5722-PA isoform 2 [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to Niemann-Pick Type C-1 CG5722-PA isoform 2 [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0005765 lysosomal membrane GO:0030301 cholesterol transport GO:0016021 integral to membrane GO:0008158 hedgehog receptor activity GO:0016125 sterol metabolic process GO:0007591 molting cycle, chitin-based cuticle |
| InterPro families | IPR003392 Patched IPR004765 Niemann-Pick C type protein IPR000731 Sterol-sensing domain |
| Orthology group | MCL10241 |
Nucleotide sequence:
ATGTTCGTTTGGAACGCCGTCATTGAGTTTATTGTACCTTGGCGACAAACCCTTGAGAAA
TTCTGTCCGGATATAGCGGCTGGTGACGTCAGCTGTTGTGATGCCGACCAGCTCAAGAAC
TTCAACGCCAACATCGGCATAGCCTTGAACCTGTTGAACAGGTGTCCGACTTGCGTTAAC
AACTTCCTCAAACACATCTGCGCCCTCACCTGTTCACCAAAACAGAGCGAATTTTTAAAT
CCCGTCAAGATCGAGCCTTATAATGCCACCCATCAGCGTATAACAGAAGTTGACTATTAC
CTCGGTGCTACCTATATGAATGTGACATTTGAGTCATGTGCAAGTGTCCAGATGCCGTCA
TCCAACCAGCTGGCTTTGGATCTGATGTGCGGTGACTATGGCGCAGAGTTCTGCACACCT
CAGAGACTGTTCGACTTTATGGGTGATGCGGCCGACAGTCTGTACGTGCCCTTCCAGATA
AACTACATCAGTGGGGACGAGCCTAAGGACGGGTTCACACCGCAGAACCCCTCCGTCCTG
CCGTGCAGTGTTGGACTACCGGGTCAACCAGGGTGTTCGTGTTTGGACTGTCTAGCGTCC
TGCCCCGCGCCCCCTCCAGCCCCGCCTGCGCCGGTTCCCTTCACGATAGCCGGGGCCGAC
GGGTACGCAGTCGTCATGGCCATCGTCTTCCTCATATTCTCCACGCTGTTCCTCAGCGGA
GTGTATTGCTGTAACCAGCAGGAAAACTCAGTCGGCGTGGGTTCAGAGAACAATCAAGAG
ATGACCACCAATCCTACGGCCGTCGGTTGGTCTATCGAGCAGGCGGACGGAGGCGAGGCG
AGTTTCTTTGAGAAGCTAGGGGCTGATACCGAGACCAAACTCGAAGACTTCTTCCAATGG
TGGGGCTGCATCATGGCGTCCAGCCCATGGATCGTGCTATTCTTCGGCCTGTGTTTCGTG
GTGGCTTTAGGTCACGGCATCAAGTACATGATAGTCACGACGAACCCGGTGGAACTGTGG
GCGTCTCCTAATTCGAGATCCCGTATGGAGAGGGAGTACTTCGATTACCACTTCCGGCCG
TTCTACAGGTCAGAGATGCTCATCATCAGCTCCAAGGGTCTGCCGGATGTGGAATACAAG
GCGCCGGATGGGACCGTCATGCAGTTCGGACCGGTTTTCAATTCACAGTTCCTGTTTGAC
GTCCTCGACCTCCAGAATAGGATCATGGGTCTAGGTAACGAGACTCGTATACAGGACGTG
TGTTACGCCCCGATGTCGTCTCCGTTCGAGGGGCCGGTGACCCCTGAGCAGTGCGGGGTC
ATGTCAGTGTGGGGCTGGTGGGAGAACAACCCCGACAACGTCAGGGACGATCTGGAGAAC
AATGAGTACCTGTCCAAGATCCTCTCGTGTGCACAGTCAATTTTTTTTTCAATATATATA
TATATATATATAGTGTGGGGCGGACCGGTGTCCCCGGGCGTAGTGCTGGGCGGCTTCCTG
TCCCCGGGCGAGCCCCTTACTAAGTCGTCCAAGTTCCACCGCGCCAACGCTCTCATCCTG
ACCTTCCTAGTGGATAATCATCACGACAAAGAAAAGCTGAAGCCGGCGTTGGAGTGGGAG
AAGGAGTTCATAAAGTTCATGAAGAACTACACGGAGAACGAGATGCCTTCATACATGGAC
ATCGCGTACACGTCCGAGAGGTCCATCGAGGACGAGCTGGACCGCGAGTCGCAGTCCGAC
GTGTCCACCATCCTCGTGTCTTACTTCATCATGTTCGCATACATCGCCATATCCTTGGGA
CGGTTCACCACCTGCTCTAGGCTCCTCATCGATAGCAAGGTCACCCTCGGTCTCGGAGGT
GTGTTGATCGTGCTGGCGTCCGTGGTGTGTTCTGTGGGCCTGTTCGGTTTCTTCGGAGTG
GCCGCGACGCTGATCATCATGGAGGTGATCCCGTTCCTGGTGCTGGCGGTGGGTGTGGAC
AACATCTTCATCCTGGTCCAGACCAGCCAGAGAGAGCCGAGGAGGCCGGATGAGACCATC
GCACAGCACATCGGAAGAACCCTGGGTCAGGTGGGTCCATCGATGTTCCTGACCTCGGTG
TCGGAGTCCGTGTGTTTCTTCCTGGGCGCCCTGAGCGACATGCCGGCGGTGCGAGCCTTC
GCCCTGTACGCGGGCGCCGCCCTCTTGGTCGACTTCCTGCTACAGATCACATGCTTCGTG
GCGCTCCTGGCTCTGGATACGAGAAGACAGAACGACAACAGGTTCGACGTGTTCTGTTGT
TTGTCTGGCGCCAAGTCCGAGGCGGCGGAGGTGGCGGGCGAGGGCGGGCTGTACAACCTG
TTCCGCTACGTGTACGTCCCCTTCCTCATGAAGAGGGAGGTGCGCGCGTCCGTTATGATC
ATATTCTTCGCATGGCTCTGCTCCTCTGTAGCTGTGGCGCCTCACATAGACATCGGTCTA
GACCAAGAGCTGTCGATGCCTCAGGACAGCTTCCAGACGAAATACTTCCAGCATCTCAAC
AAGTTCCTCAACATGGGTCTGCCTGTGTTCTTCGTCGTCACGGAGGGATTGAATTACTCG
GATCAGAACACTCAGAATATGATATGCGGAACAAGATACTGCAACGACGACAGTCTGTCC
ATGCAGCTATATGCTGCCTCCCGCATATCGAACGTGTCGTACATCGCCCAGCCTCCGAAC
TCTTGGTTGGACGACTTCTTCGAGTGGTCGTCGCTGCCTTCCTGCTGCAAACGGTTCCCA
GGAAACGATAGCTTCTGTCCAAACAATTACGGACCTGATAAATGCCAGCAGTGTAATATA
CCGCTGGTGGGTCCAGAGCAGCGACCAGCTCTGGCCGACTTCAACCACTACCTGCCGTTC
TTCCTCCAAGACAACCCCACCCCTCAATGTCCAAAAGGCGGGCACGCGGCCTACGGTCGT
TCAGTCAATTACATCGCCAACAACAAGGGCATCAGTCGCGTCGGCGCTACTTATTACCAA
GCGTACCACACAGTCCTTAAGACGAGCAGTGACTACTACTCGGCGATGCGAGCCGCTCGT
TCCATCGCCGCCAACCTAACGGCGACCCTGAACCGTAACGCCAACACGACCGTGAACGTT
TTCCCCTACTCCGTGTTCTACGTGTTCTACGAACAGTACCTCACCATGTGGCCGGACACG
CTCAAGTCGATGGGCATATCTGTGCTATCCATTTTCCTTGTCACCTTCGTCTTGATGGGC
TTCGACTTATTCTCGGCCTTGGTTGTTGTTATAACCATCACCATGATAGTGGTGAACCTC
GGCGGCCTCATGTACTGGTGGAACATCAGTCTCAACGCTGTCTCACTCGTTAACTTGGTG
ATGGCGGTGGGTATAGCGGTGGAGTTCTGCTCGCACTTGGTGCACTCGTTCAGTGTGAGC
GCGGGCGCCGGCCGCATCGCACGCGCCTCCGCCGCTATATATATATATATTAATATATAT
TATACAGGTGTGTTCTACTTCCGTATGTACCTGGGAATTGTGTTGTTCGGAGCCGCCCAT
GGCCTGATCTTCCTTCCCGTCATGCTCAGCTACATTGGTAAGTGA
Protein sequence:
MFVWNAVIEFIVPWRQTLEKFCPDIAAGDVSCCDADQLKNFNANIGIALNLLNRCPTCVN
NFLKHICALTCSPKQSEFLNPVKIEPYNATHQRITEVDYYLGATYMNVTFESCASVQMPS
SNQLALDLMCGDYGAEFCTPQRLFDFMGDAADSLYVPFQINYISGDEPKDGFTPQNPSVL
PCSVGLPGQPGCSCLDCLASCPAPPPAPPAPVPFTIAGADGYAVVMAIVFLIFSTLFLSG
VYCCNQQENSVGVGSENNQEMTTNPTAVGWSIEQADGGEASFFEKLGADTETKLEDFFQW
WGCIMASSPWIVLFFGLCFVVALGHGIKYMIVTTNPVELWASPNSRSRMEREYFDYHFRP
FYRSEMLIISSKGLPDVEYKAPDGTVMQFGPVFNSQFLFDVLDLQNRIMGLGNETRIQDV
CYAPMSSPFEGPVTPEQCGVMSVWGWWENNPDNVRDDLENNEYLSKILSCAQSIFFSIYI
YIYIVWGGPVSPGVVLGGFLSPGEPLTKSSKFHRANALILTFLVDNHHDKEKLKPALEWE
KEFIKFMKNYTENEMPSYMDIAYTSERSIEDELDRESQSDVSTILVSYFIMFAYIAISLG
RFTTCSRLLIDSKVTLGLGGVLIVLASVVCSVGLFGFFGVAATLIIMEVIPFLVLAVGVD
NIFILVQTSQREPRRPDETIAQHIGRTLGQVGPSMFLTSVSESVCFFLGALSDMPAVRAF
ALYAGAALLVDFLLQITCFVALLALDTRRQNDNRFDVFCCLSGAKSEAAEVAGEGGLYNL
FRYVYVPFLMKREVRASVMIIFFAWLCSSVAVAPHIDIGLDQELSMPQDSFQTKYFQHLN
KFLNMGLPVFFVVTEGLNYSDQNTQNMICGTRYCNDDSLSMQLYAASRISNVSYIAQPPN
SWLDDFFEWSSLPSCCKRFPGNDSFCPNNYGPDKCQQCNIPLVGPEQRPALADFNHYLPF
FLQDNPTPQCPKGGHAAYGRSVNYIANNKGISRVGATYYQAYHTVLKTSSDYYSAMRAAR
SIAANLTATLNRNANTTVNVFPYSVFYVFYEQYLTMWPDTLKSMGISVLSIFLVTFVLMG
FDLFSALVVVITITMIVVNLGGLMYWWNISLNAVSLVNLVMAVGIAVEFCSHLVHSFSVS
AGAGRIARASAAIYIYINIYYTGVFYFRMYLGIVLFGAAHGLIFLPVMLSYIGK