| New model in OGS2.0 | DPOGS202662 |
|---|---|
| Genomic Position | scaffold539:+ 19681-23473 |
| See gene structure | |
| CDS Length | 1251 |
| Paired RNAseq reads | 147 |
| Single RNAseq reads | 382 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001290 (1e-166) |
| Best Drosophila hit | TNF-receptor-associated factor 6 (3e-73) |
| Best Human hit | TNF receptor-associated factor 6 (4e-43) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP003004-PA [Tribolium castaneum] (1e-99) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP003004-PA [Tribolium castaneum] (4e-98) |
| GeneOntology terms | GO:0007391 dorsal closure GO:0005515 protein binding GO:0006952 defense response GO:0007165 signal transduction GO:0043122 regulation of I-kappaB kinase/NF-kappaB cascade GO:0045087 innate immune response GO:0008270 zinc ion binding GO:0008063 Toll signaling pathway GO:0005622 intracellular GO:0050829 defense response to Gram-negative bacterium |
| InterPro families | IPR008974 TRAF-like IPR002083 MATH IPR018957 Zinc finger, C3HC4 RING-type IPR013083 Zinc finger, RING/FYVE/PHD-type IPR013322 TRAF-type IPR017907 Zinc finger, RING-type, conserved site IPR001841 Zinc finger, RING-type |
| Orthology group | MCL16585 |
Nucleotide sequence:
ATGGATCCCAACAAAATTAAAAATGCTTCGGAAGGTATAGCTCCTATGGGTATAACAGCC
CTTAATGAAACTATTCTCACCAATCAGCCAGAGTCAAGGTATGAATGTCCTGTGTGTCTG
AACTGGCTTAGAGATCCTGTCATCACGACATGTGGTCACAAATTCTGTAAATCATGCATC
ACTTCCTGGTTACAAAATAGTGGTCATTGCCCAATTGACAATATAAATCTCAGTATGAAA
GTTGACATATTCCCTGACAATTACACTAAAAGGGAAATTCAAGAGCAAAGAATGTCGTGT
CCTTTTGCCACAAAAGGCTGTGCAGTGAAAGTGACTCCATTGGACTTGGACTCTCACATA
GCGAGTTGTGAGTTCAATCAACCCGAAGCTTCGTCCCAACCTCAAGTACAGGTGCCATGT
ACATTCAGTGCTCTCGGCTGCAAGGAGACATTCGAAACACAGGAAGATATGAATGACCAT
TTACATAGTGATGTACAGACTCACATGAGTCTCCTAATGAACGCCTATTCCAAGTTACAA
ATCGACAATGACATATCGAATGCCAGTATGGATGCGAAGGAGCAAGAAGCTATGCTTCTA
TGGGAACCGTCCAAAGATGGCGCTGCGAGTACATCGCCACCAGTGAACAATACTAGCGCT
CTTATAAGGGCGCTGTATGAAAGGGTTGTGGTCCTTGAACAGAGGAATCGTGAACTGGAT
ATAGTCATAGCCAACATTTCAAAGCAAATGTCAGCATTTGCTGTAGCCAAAATGAAGCAA
AACAACGACTTAATACTCCGTTACTGTATGGGAAATTATATTTGGAAGATAGACAATTTT
AAAGCCAGGTTAGAAGCAATGCAAAAGGATCATTTTAAAATGTTGTACAGCCCTGGCTTC
TATACCTCGCCTAATGGTTACAGATTCTGTGTCCGTCTCAACATATCACCGCAGAACCCA
CAGTGTTTTGCTCTTCATGTGCATTTAATGAAAACTGAATACGATGACTGTTTGGAATGG
CCTTTCAATGGGAGGATATCCTTCGCTATGATCAATCAATACAACCCGGAGCTCACCCAG
AGGGATACAATGATGTCCAACTCAACTTTGATAGCATTCAGGAAGCCGTCCACGGAGATA
TGTGTCAGGGGTTTTGGTTACACCGAATATGCAGTGGTTAATGATGTTGCCAGGAACGGC
TTTGTTAAGGATGACACGCTCATTGTGAGAGTTCATATAAAATGTGTATGA
Protein sequence:
MDPNKIKNASEGIAPMGITALNETILTNQPESRYECPVCLNWLRDPVITTCGHKFCKSCI
TSWLQNSGHCPIDNINLSMKVDIFPDNYTKREIQEQRMSCPFATKGCAVKVTPLDLDSHI
ASCEFNQPEASSQPQVQVPCTFSALGCKETFETQEDMNDHLHSDVQTHMSLLMNAYSKLQ
IDNDISNASMDAKEQEAMLLWEPSKDGAASTSPPVNNTSALIRALYERVVVLEQRNRELD
IVIANISKQMSAFAVAKMKQNNDLILRYCMGNYIWKIDNFKARLEAMQKDHFKMLYSPGF
YTSPNGYRFCVRLNISPQNPQCFALHVHLMKTEYDDCLEWPFNGRISFAMINQYNPELTQ
RDTMMSNSTLIAFRKPSTEICVRGFGYTEYAVVNDVARNGFVKDDTLIVRVHIKCV