| New model in OGS2.0 | DPOGS205029 |
|---|---|
| Genomic Position | scaffold2260:+ 77-6854 |
| See gene structure | |
| CDS Length | 1533 |
| Paired RNAseq reads | 699 |
| Single RNAseq reads | 2581 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010363 (1e-39) |
| Best Drosophila hit | down syndrome cell adhesion molecule, isoform O (2e-80) |
| Best Human hit | ND |
| Best NR hit (blastp) | dscam [Drosophila pseudoobscura pseudoobscura] (1e-129) |
| Best NR hit (blastx) | dscam [Drosophila pseudoobscura pseudoobscura] (2e-128) |
| GeneOntology terms | GO:0005887 integral to plasma membrane GO:0007411 axon guidance GO:0008046 axon guidance receptor activity GO:0007422 peripheral nervous system development GO:0016319 mushroom body development GO:0007413 axonal fasciculation GO:0006909 phagocytosis GO:0051635 bacterial cell surface binding GO:0048666 neuron development GO:0030424 axon GO:0070593 dendrite self-avoidance GO:0043025 neuronal cell body GO:0030425 dendrite GO:0005515 protein binding GO:0021551 central nervous system morphogenesis GO:0048846 axon extension involved in axon guidance GO:0042803 protein homodimerization activity |
| InterPro families | IPR021012 Down syndrome cell adhesion molecule, C-terminal |
| Orthology group | ND |
Nucleotide sequence:
ATGTGGGGTGCTGCTGAATGGAATCAAATCTCCAACGCCGTTAAACCTGGTGGAAACTTT
GTTGTACTTGATCTCGAACCCGCCACTTGGTACGTGCTTAGGATCACCGCCCACAACAAC
GCTGGATTCAACGTCGCCGAATACGAGTTCGCCACCCTCACCATGACCGGAGGTACCATA
GCACCGGCGCGTGAAGTTGGAGACGGTACATTGACCCCGGAACAAACTCTGAAGATAATA
CTCTCCCACCTTAACTTGATAGTACCAGTAGTGGCCGCTATACTCGTCATAATTATAGCC
ATTGTGGTCGTTTGCGTCGTACGAGGGGCGAGGGATCACCACCACAAAGGCACGATAGCC
CCACTGCCTGGTAACGCTGAGGATAAGGAACTGCCTCCGTGGGTGAAGGCGTGGTTGGAA
CCGGAAGTATTAGTACCGATCCTGGCCACCATAGTTGTGTTTATAGTTGGGATGGTTGTT
ATCTGTCTAACCCTAGCCAGAAGGAACACCCCCCACCGCCTGCGAGGTCAGAAGGAGTAC
TATGACGCCGTGTACAACACTTCCGGTGCTGCTATGGGCGGTGCTGGTGGTACTCTGGAC
AAACGAGGTGGACTCCGTGATGAATTGGGATACATCGCGCCTCCCAATCGCAAACTACCC
CCTGTGCCCGGCTCCAACTACAACACGTGCGACCGCGTCAAACGTCAAGCTGTTATTATG
GGCGCGCACTCCACGTGGGACCCTCGCAGACATCACTACGAGAGAATACGACGCATGAGA
AGGACAAATTCTGGTGAAACTATCTCCACAGGCATGGAAGACGAGATCTGCCCCTACGCG
ACCTTCCACCTGTTAGGTTTCCGTGAAGAGATGGACCCAAGCAAGGCGATCGCTTTCCCC
CACCACCATCCCTCCCACGCCGGCACCCTCGCACACCCACACCCTCACCCACATCACCCC
GCGCACTCACGAGCTGGATCTCAGAGCATGCCCCGTGCTAACAGCCGTTACGCCCGCAAG
AACTCTCAAGGAGGACAAAGTGCTATTTATTCCACCGCTCCCGAGTACGACGATCCCGCC
ACCTGCGCTGAAGAAGACCAATATCGTGCCCGCTACTCTCGTCCAATGTACGCCTGCGGC
CCTGAGTACGATGAACCCGCCTGCTGCGCCCCCGAGGACGAACAATATACTGGAGCTTAC
GGCACCCCATACTCTGACCACTACGGATCACGACCCAGCATTGGAACCCGTAAATGCGGC
AGCTCCCCCGAGCCCCCACCACCACCACCCCGCAACAACACCGACAACAACTGCTCATCA
TCCTTCAACGAAAGCAAGGACTCCAACGAGATCTCCGAGGCGGAATGTGACCAACCACGT
AACTACCCCGTAAGGGCCCACACTGTCAAGGATGGTATGCACAGCGACGAAATGAGGAAA
CTCATTGACAGACCAGAAGCAACCACCCCAATCCCCCAGCAAGCAGTCCACGGGCGGGGG
GGACTCACAGCCTACGATACTGTGGCAGTGTAA
Protein sequence:
MWGAAEWNQISNAVKPGGNFVVLDLEPATWYVLRITAHNNAGFNVAEYEFATLTMTGGTI
APAREVGDGTLTPEQTLKIILSHLNLIVPVVAAILVIIIAIVVVCVVRGARDHHHKGTIA
PLPGNAEDKELPPWVKAWLEPEVLVPILATIVVFIVGMVVICLTLARRNTPHRLRGQKEY
YDAVYNTSGAAMGGAGGTLDKRGGLRDELGYIAPPNRKLPPVPGSNYNTCDRVKRQAVIM
GAHSTWDPRRHHYERIRRMRRTNSGETISTGMEDEICPYATFHLLGFREEMDPSKAIAFP
HHHPSHAGTLAHPHPHPHHPAHSRAGSQSMPRANSRYARKNSQGGQSAIYSTAPEYDDPA
TCAEEDQYRARYSRPMYACGPEYDEPACCAPEDEQYTGAYGTPYSDHYGSRPSIGTRKCG
SSPEPPPPPPRNNTDNNCSSSFNESKDSNEISEAECDQPRNYPVRAHTVKDGMHSDEMRK
LIDRPEATTPIPQQAVHGRGGLTAYDTVAV