| New model in OGS2.0 | DPOGS211287 |
|---|---|
| Genomic Position | scaffold535:+ 3559-19652 |
| See gene structure | |
| CDS Length | 1710 |
| Paired RNAseq reads | 495 |
| Single RNAseq reads | 1813 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012504 (1e-164) |
| Best Drosophila hit | pHCl, isoform F (0.0) |
| Best Human hit | glycine receptor subunit alpha-3 isoform a (6e-30) |
| Best NR hit (blastp) | GM24460 [Drosophila sechellia] (0.0) |
| Best NR hit (blastx) | GD12531 [Drosophila simulans] (0.0) |
| GeneOntology terms | GO:0016935 glycine-gated chloride channel complex GO:0016934 extracellular-glycine-gated chloride channel activity GO:0006811 ion transport GO:0005254 chloride channel activity |
| InterPro families | IPR015680 Glutamate-Gated Chloride Channel IPR006201 Neurotransmitter-gated ion-channel IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR006028 Gamma-aminobutyric acid A receptor |
| Orthology group | MCL14999 |
Nucleotide sequence:
ATGTCCGTGACCACACCGCAGAACCTCGCGACACCATGTCCTAATATGGGTTGGTCATGC
GTTGTGGCACGCGCCGTGGCTTTCCTCTTTATGCTCAGCCGAGCGTCCGCGCTCACCTCC
GACATCTTTGCGGCGGGCAAGTCGGACAAAGAGATTTTGGACAATCTGTTGAAAAATTCC
CGCTACGACAAAAGACTGCTTCCACCAGTAGATGATCCTGATTTTTGTTGTGGTCTAACG
TCACCCAACGACACTTTGAATAAAGATAATATTGGGCTACCCTCGCTTCGGCCTCGATCG
CCCAATCGCGGTGTCCTCACCGTAAATGTTAGCGTGCTACTTCTTAGTTTAGCGTCTCCA
GATGAATCTAGTCTTAAATACGAGGTTGAATTCCTCCTTCAGCAACAATGGTATGACCCG
CGGCTCCGGTATTCGAATCAGTCCCATTACGACTATTTGAATGCCATCCACCATCACGAA
GATATTTGGCTACCCGACACGTACTTCATTATGCACGGTGACTTCAAAGATCCGATAATT
CCGATGCACTTTGCGTTGCGGATCTATCGCAACGGGACTATCAACTATCTGATGAGACGT
CACCTCATACTGTCTTGTCAGGGACGGCTGAACATCTTCCCCTTCGACGACCCATTGTGT
TCATTTGCCTTAGAGAGTATATCCTACGAGCAATCTGCCATAACGTACGTGTGGAAGAAT
GATGAAGACACGCTGCGGAAGTCGCCATCTTTGACGACCCTCAACGCTTACCTCATACAG
AACCAGACCATACCTTGCCCCATAAAAGCCAGTTGGAGAGGTAACTACAGCTGTCTAAAG
GTGGACCTTATTTTTACGAGAGACCGAGCATTCTACTTTACCACAGTTTTTATTCCTGGC
ATAATCCTGGTGACCTCTTCATTCATCACATTTTGGCTGGAATGGAACGCAGTTCCGGCT
CGTTCCATGATAGGTAATTACAGCTGCCTCAAAGTGGATCTCATCTTCACGCGGGATAGA
TCATTTTACTTCACCACTGTTTTTATTCCGGGAATCATTTTGGTGACCTCATCATTTATT
ACTTTTTGGCTGGAATGGAATGCTGTGCCTGCTAGAGTCATGATCGGTGTAACTACAATG
TTGAATTTCTTCACAACATCAAACGGTTTTCGGTCAACATTGCCGGTTGTATCGAATCTA
ACAGCTATGAACGTATGGGACGGCGTCTGCATGTGCTTCATATACGCGTCGCTTCTGGAA
TTCGTGTGCGTGAATTACGTCGGCAGGAAGCGTCCTTTGCATAACGTCGTGTACCGCCCG
GGAGAGAACCCCGTCACTCAGCGACTACCCGCAGTTCTGAGCAGAATTGGCATTATACTG
GCCAGCCCCTTGGAGGCGATGGCATTTCTCAACTGGTCTAAAACTGATACGTCTGAGCCG
GACACTAGCGGCGCTGGTGATAAAAAGCGCGAGTCGAGTGGCGCGGCTGATATAGTTACG
TGTACAACTTGCACCGCGCCAGGAGCTTGTACTCACACGGCCAACAACGGCGGCGTCTCC
GAGCCATGTTTCGTCCAGGTCCGTAAAAAGGAGCCGCCTCACCCCATCAGAGTGGCCAAG
ACCATCGACGTCATAGCTCGAATCACTTTCCCGACCGCATACGCGGTATTTCTTATCTTC
TTCTTCATTCACTACAAAGCCTTCTCTTAA
Protein sequence:
MSVTTPQNLATPCPNMGWSCVVARAVAFLFMLSRASALTSDIFAAGKSDKEILDNLLKNS
RYDKRLLPPVDDPDFCCGLTSPNDTLNKDNIGLPSLRPRSPNRGVLTVNVSVLLLSLASP
DESSLKYEVEFLLQQQWYDPRLRYSNQSHYDYLNAIHHHEDIWLPDTYFIMHGDFKDPII
PMHFALRIYRNGTINYLMRRHLILSCQGRLNIFPFDDPLCSFALESISYEQSAITYVWKN
DEDTLRKSPSLTTLNAYLIQNQTIPCPIKASWRGNYSCLKVDLIFTRDRAFYFTTVFIPG
IILVTSSFITFWLEWNAVPARSMIGNYSCLKVDLIFTRDRSFYFTTVFIPGIILVTSSFI
TFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLE
FVCVNYVGRKRPLHNVVYRPGENPVTQRLPAVLSRIGIILASPLEAMAFLNWSKTDTSEP
DTSGAGDKKRESSGAADIVTCTTCTAPGACTHTANNGGVSEPCFVQVRKKEPPHPIRVAK
TIDVIARITFPTAYAVFLIFFFIHYKAFS