| Genomic Position | scaffold4492:- 77-5595 |
|---|---|
| See gene structure | |
| CDS Length | 1065 |
| Paired RNAseq reads | 105 |
| Single RNAseq reads | 512 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006411 (2e-48) |
| Best Drosophila hit | vacuolar protein sorting 16A (2e-37) |
| Best Human hit | vacuolar protein sorting-associated protein 16 homolog isoform 1 (1e-42) |
| Best NR hit (blastp) | PREDICTED: similar to vacuolar protein sorting vps16 [Tribolium castaneum] (4e-66) |
| Best NR hit (blastx) | PREDICTED: similar to vacuolar protein sorting vps16 [Tribolium castaneum] (2e-62) |
| GeneOntology terms | GO:0005737 cytoplasm GO:0006886 intracellular protein transport GO:0003674 molecular_function |
| InterPro families | IPR006926 Vps16, N-terminal IPR006925 Vps16, C-terminal |
| Orthology group | ND |
Nucleotide sequence:
ATGGACGAAGGCCTTGGCAACATGATTGTTAGTGGAGCACAGTATGGAGGTCCTATTGCT
GTTGTTAGAGACAGAAAACAGTTTGTAAGGATTGTGACGACAGCTAAGCCCGTCATCACT
ATATATAACTGTGTTGGGAACATTATATCAAAGATTCTGTGGAACAATGGAGTTTTAATA
CACATGGGCTGGTCGGACGGTGAACAGCTTCTATGTATTCAAGAGAGTGGTGATGTTTTG
ATATATGATATGTTTGGGGCATACCAAAAGACATTCAGTTTAGGGCAAGAAGTTAGAGAT
ACAAAGCGTCGCAGTCACCGCGCCGATGAGTACATTCGTCTGGTGAAGCCAGATCTTGCC
GCTGCGGTTCAAGACTGTATAGACGCGTCTACCTTCGAATTCGACCCTGATGTCCAGAAA
ATGTTAATTCGAGCGGCACAGTTCGGTAAAGGCTTCATCAGCGATCCGCTTCTGACGGAG
CATTACGTGGATACATGTCGTTGGCTGAGAGTGCTAAATGCTCTACGAGGGGTTAGAGTA
GGCATACCTTTGACTTACTTGCAGTATCCTTTTTTATCCGACTACCCGCCTTTAGACCTA
GCCCAACATCTTGGGAAACATATTCTATTAGATAGATTAATATGGCGCCGACTGCACTGT
CTCGCTGAACATATAGCGTCGTATCTGCAACTTAAAGACGGACAAACAAGGGTTTTATCA
CACTGGGCCTGTTATAAGGTAACTCAACCCCACTTGGACAACGAGAGTGCTGCGAGGGAA
ATAGGAGAGAAATTGAAAAATATCCCTGGCATATCCTATTCAACCATAGCTATGAAAGCT
GCTGAGAAAGGTCGAAAAGCGTTGGCCATTAAAATCTTAGAGTACGAGACCCGCAGTTCT
CTCCAGGTGCCCTTATTAGTGTCACTGGGCGAAGGTTCCTCCGCTCTCATGAAGGCAACC
GCCAGCGGTAACACTGACCTCGTTTACACCGTCCTTCTACATCTCAAAGAAAAGATGGGC
AAACACGAGTTTGAGGTGGGTCTCTTGAGCCAAATCATTCAATAA
Protein sequence:
MDEGLGNMIVSGAQYGGPIAVVRDRKQFVRIVTTAKPVITIYNCVGNIISKILWNNGVLI
HMGWSDGEQLLCIQESGDVLIYDMFGAYQKTFSLGQEVRDTKRRSHRADEYIRLVKPDLA
AAVQDCIDASTFEFDPDVQKMLIRAAQFGKGFISDPLLTEHYVDTCRWLRVLNALRGVRV
GIPLTYLQYPFLSDYPPLDLAQHLGKHILLDRLIWRRLHCLAEHIASYLQLKDGQTRVLS
HWACYKVTQPHLDNESAAREIGEKLKNIPGISYSTIAMKAAEKGRKALAIKILEYETRSS
LQVPLLVSLGEGSSALMKATASGNTDLVYTVLLHLKEKMGKHEFEVGLLSQIIQ