| DPOGS200210 | ||
|---|---|---|
| Transcript | DPOGS200210-TA | 489 bp |
| Protein | DPOGS200210-PA | 162 aa |
| Genomic position | DPSCF300093 + 569591-573048 | |
| RNAseq coverage | 649x (Rank: top 20%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL014086 | 2e-33 | 61.29% | |
| Bombyx | BGIBMGA002203-TA | 7e-75 | 80.86% | |
| Drosophila | Rab-RP4-PA | 1e-33 | 54.62% | |
| EBI UniRef50 | UniRef50_Q7QGS6 | 9e-41 | 62.50% | AGAP010875-PA n=4 Tax=Coelomata RepID=Q7QGS6_ANOGA |
| NCBI RefSeq | XP_970378.1 | 1e-41 | 45.81% | PREDICTED: similar to RAB18, member RAS oncogene family [Tribolium castaneum] |
| NCBI nr blastp | gi|91082425 | 2e-40 | 45.81% | PREDICTED: similar to RAB18, member RAS oncogene family [Tribolium castaneum] |
| NCBI nr blastx | gi|91082425 | 8e-40 | 45.81% | PREDICTED: similar to RAB18, member RAS oncogene family [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0007264 | 1.5e-45 | small GTPase mediated signal transduction | |
| GO:0005525 | 1.5e-45 | GTP binding | ||
| GO:0015031 | 1.5e-45 | protein transport | ||
| GO:0016020 | 1.4e-07 | membrane | ||
| GO:0007165 | 1.4e-07 | signal transduction | ||
| GO:0006184 | 1.4e-07 | GTP catabolic process | ||
| GO:0003924 | 1.4e-07 | GTPase activity | ||
| GO:0005622 | 1.9e-07 | intracellular | ||
| KEGG pathway | ||||
| InterPro domain | [7-151] IPR003579 | 1.5e-45 | Small GTPase superfamily, Rab type | |
| [8-124] IPR001806 | 8.6e-40 | Small GTPase superfamily | ||
| [6-126] IPR005225 | 2.6e-24 | Small GTP-binding protein domain | ||
| [4-155] IPR020849 | 1.4e-07 | Small GTPase superfamily, Ras type | ||
| [9-147] IPR003578 | 1.9e-07 | Small GTPase superfamily, Rho type | ||
| Orthology group | MCL26458 | Lepidoptera specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS200210-TA
ATGGATTGCGTTACCACATTAAAAATCCTTGTCATTGGAGAGAGTGGAGTTGGAAAGTCAAGCATCATCCTAGCGTTCACTACAGGGGACTATAATTCTTCGTTTCCGGCCACAATAGGAGTCGACTACAAATGCAAGGTTATGGAAGTGAACGGTTTAAAAGTGAAACTGGGTATTTGGGATACGGCCGGCCAGGAGAGATATAGAACTTTAACCAACAGTTTTTACAGGGACGCCCACGGGGCAATACTAGTCTATGATGTTTCAGAACCAAAGACCTTACAGAAACTGAGTGAATGGGTCGATGAACTGCAGGTGTACTCCACAAAGAAGAACATCGTGTGTTTGGTTGTGGGAAATAAAATTGATAAGATAATAGAGACTCCCGGTCTGTGGGAGTCTACCGGCTCGTCTTCCAACATCCGCGTCACCAGCGAGGAGCGTTCGCAGCAGGAATCCTCCTGCTACGATTACACCTGTTCCATTTAA
>DPOGS200210-PA
MDCVTTLKILVIGESGVGKSSIILAFTTGDYNSSFPATIGVDYKCKVMEVNGLKVKLGIWDTAGQERYRTLTNSFYRDAHGAILVYDVSEPKTLQKLSEWVDELQVYSTKKNIVCLVVGNKIDKIIETPGLWESTGSSSNIRVTSEERSQQESSCYDYTCSI-