DPOGS200276 | ||
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Transcript | DPOGS200276-TA | 411 bp |
Protein | DPOGS200276-PA | 136 aa |
Genomic position | DPSCF300026 - 848657-849155 | |
RNAseq coverage | 7890x (Rank: top 2%) |
Annotation | ||||
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Heliconius | HMEL000014 | 1e-74 | 100.00% |   |
Bombyx | BGIBMGA005550-TA | 1e-74 | 100.00% |   |
Drosophila | His3.3A-PA | 1e-74 | 100.00% |   |
EBI UniRef50 | UniRef50_P84243 | 2e-72 | 100.00% | Histone H3.3 n=3487 Tax=root RepID=H33_HUMAN |
NCBI RefSeq | XP_001608164.1 | 2e-73 | 100.00% | PREDICTED: hypothetical protein isoform 1 [Nasonia vitripennis] |
NCBI nr blastp | gi|4504279 | 6e-72 | 100.00% | histone H3.3 [Homo sapiens] |
NCBI nr blastx | gi|334359125 | 3e-69 | 100.00% | Chain E, The Human Nucleosome Structure Containing The Histone Variant H3.3 |
Group | ||||
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Gene Ontology | GO:0003677 | 1.1e-143 | DNA binding | |
GO:0006334 | 1.1e-143 | nucleosome assembly | ||
GO:0000786 | 1.1e-143 | nucleosome | ||
KEGG pathway | nvi:100117018 | 7e-73 |   | |
  | K11253 (H3) | maps-> | Systemic lupus erythematosus | |
InterPro domain | [1-136] IPR000164 | 1.1e-143 | Histone H3 | |
[2-136] IPR009072 | 1.5e-81 | Histone-fold | ||
[58-132] IPR007125 | 8.3e-33 | Histone core | ||
Orthology group | MCL10413 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS200276-TA
ATGGCTCGTACCAAGCAGACAGCTCGTAAATCTACGGGAGGTAAAGCTCCCCGAAAACAGCTTGCCACAAAAGCGGCGCGTAAATCAGCTCCCAGTACTGGTGGAGTGAAAAAACCACATCGTTATCGCCCTGGTACCGTGGCCCTTCGAGAAATTCGTCGTTACCAAAAGTCCACTGAATTGTTGATTCGTAAACTGCCGTTCCAGCGTCTCGTAAGAGAAATAGCTCAGGATTTCAAAACTGACCTTCGTTTCCAATCTGCCGCTATTGGTGCATTGCAGGAAGCCAGTGAAGCCTACCTTGTAGGTCTCTTTGAAGACACCAATTTGTGCGCTATCCACGCCAAGCGTGTAACCATCATGCCTAAAGATATCCAACTGGCCAGACGGATTCGTGGGGAGCGAGCATAA
>DPOGS200276-PA
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA-