DPOGS200441 | ||
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Transcript | DPOGS200441-TA | 351 bp |
Protein | DPOGS200441-PA | 116 aa |
Genomic position | DPSCF300236 + 447611-448433 | |
RNAseq coverage | 524x (Rank: top 24%) |
Annotation | ||||
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Heliconius | HMEL002999 | 3e-58 | 92.24% |   |
Bombyx | BGIBMGA008899-TA | 3e-57 | 92.31% |   |
Drosophila | LSm7-PA | 3e-43 | 79.61% |   |
EBI UniRef50 | UniRef50_Q9UK45 | 3e-41 | 79.80% | U6 snRNA-associated Sm-like protein LSm7 n=37 Tax=Opisthokonta RepID=LSM7_HUMAN |
NCBI RefSeq | NP_001040136.1 | 1e-55 | 92.31% | U6 snRNA-associated Sm-like protein [Bombyx mori] |
NCBI nr blastp | gi|114050803 | 3e-54 | 92.31% | U6 snRNA-associated Sm-like protein [Bombyx mori] |
NCBI nr blastx | gi|114050803 | 1e-53 | 92.31% | U6 snRNA-associated Sm-like protein [Bombyx mori] |
Group | ||||
---|---|---|---|---|
KEGG pathway | tca:658224 | 3e-48 |   | |
  | K12626 (LSM7) | maps-> | RNA degradation | |
  |   |   | Spliceosome | |
InterPro domain | [1-117] IPR017132 | 1.8e-72 | U6 snRNA-associated Sm-like protein LSm7 | |
[28-101] IPR006649 | 9.3e-21 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
[29-101] IPR001163 | 3e-17 | Like-Sm ribonucleoprotein (LSM) domain | ||
[22-107] IPR010920 | 5.2e-17 | Like-Sm ribonucleoprotein (LSM)-related domain | ||
Orthology group | MCL12186 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS200441-TA
ATGGCTTCAAAAGAAGGAGATAAAACTAAATCAAGTCAAGGTGGTGGCGATAATAAAGAAAAACGTAGAAAAGAATCTATTTTAGATTTAAGTAAATATCTTGAGAAATGTATTCGTGTTAAATTCGCTGGCGGACGGGAAGCGGCGGGAATTCTTAAAGGATACGACCCTCTATTAAACTTAGTGTTAGACAATACAACAGAATTTCTTAGAGATCCAGATGACCCATATAAGCTTGTGGACGACACAAGGGCATTAGGGCTTGTGGTGTGCCGAGGCACATCTGTAGTTTTAATCTGTCCAATGGATGGAATGGAGGCAATACCAAACCCTTTTATAACACAAGAGTGA
>DPOGS200441-PA
MASKEGDKTKSSQGGGDNKEKRRKESILDLSKYLEKCIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLVDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFITQE-