| DPOGS200692 | ||
|---|---|---|
| Transcript | DPOGS200692-TA | 348 bp |
| Protein | DPOGS200692-PA | 115 aa |
| Genomic position | DPSCF300353 + 142403-142952 | |
| RNAseq coverage | 228x (Rank: top 44%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL013177 | 1e-06 | 32.10% | |
| Bombyx | BGIBMGA008966-TA | 2e-47 | 93.75% | |
| Drosophila | LSm3-PB | 9e-44 | 86.96% | |
| EBI UniRef50 | UniRef50_Q8IMX8 | 2e-41 | 86.96% | FI09213p n=24 Tax=Eukaryota RepID=Q8IMX8_DROME |
| NCBI RefSeq | NP_001040418.1 | 3e-45 | 92.71% | LSM Sm-like protein family member [Bombyx mori] |
| NCBI nr blastp | gi|114051632 | 7e-44 | 92.71% | LSM Sm-like protein family member [Bombyx mori] |
| NCBI nr blastx | gi|114051632 | 6e-43 | 93.68% | LSM Sm-like protein family member [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| KEGG pathway | phu:Phum_PHUM190100 | 5e-44 | ||
| K12622 (LSM3) | maps-> | RNA degradation | ||
| Spliceosome | ||||
| InterPro domain | [27-110] IPR010920 | 1.2e-23 | Like-Sm ribonucleoprotein (LSM)-related domain | |
| [31-109] IPR006649 | 6.3e-22 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
| [34-109] IPR001163 | 1.7e-18 | Like-Sm ribonucleoprotein (LSM) domain | ||
| Orthology group | MCL11968 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS200692-TA
ATGTTATTAGTTTTCATTAATAAAAAAAGATATATTTACAGAACATTAATTGCATTTCAGGTACCTGTGATGACAGTTAAAGAACCTCTCGACTTAATTAGGTTGAGTTTGGATGAGCGAATTTACGTTAAAATGCGTAATGAACGCGAACTACGCGGAAAGCTTCATGCCTATGATCAACATTTGAATATGGTATTGGGTGACGCAGAGGAAACAATAACAACGGTTGAAATTGATGAAGAAACATATGAAGAGGTTTATAGGACAAATAAGAGAAATATTCCAATGTTATTTGTAAGAGGTGATGGAGTCATACTAGTATCTCCTCCAGTTAGAGTTGGGGTTTAA
>DPOGS200692-PA
MLLVFINKKRYIYRTLIAFQVPVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYRTNKRNIPMLFVRGDGVILVSPPVRVGV-