| DPOGS201506 | ||
|---|---|---|
| Transcript | DPOGS201506-TA | 504 bp |
| Protein | DPOGS201506-PA | 167 aa |
| Genomic position | DPSCF300006 + 958765-967317 | |
| RNAseq coverage | 927x (Rank: top 14%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL004432 | 6e-12 | 29.47% | |
| Bombyx | BGIBMGA002685-TA | 2e-63 | 96.58% | |
| Drosophila | sqd-PB | 5e-13 | 40.21% | |
| EBI UniRef50 | UniRef50_G6DNU4 | 2e-63 | 100.00% | RNA binding region containing protein 1 n=8 Tax=Endopterygota RepID=G6DNU4_DANPL |
| NCBI RefSeq | NP_001040531.1 | 2e-60 | 97.37% | RNA binding region containing protein 1 [Bombyx mori] |
| NCBI nr blastp | gi|114053145 | 3e-59 | 97.37% | RNA binding region containing protein 1 [Bombyx mori] |
| NCBI nr blastx | gi|114053145 | 2e-59 | 97.41% | RNA binding region containing protein 1 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003676 | 1.3e-23 | nucleic acid binding | |
| GO:0000166 | 1e-21 | nucleotide binding | ||
| KEGG pathway | dsi:Dsim_GD20486 | 8e-12 | ||
| K03102 (SQD) | maps-> | Dorso-ventral axis formation | ||
| InterPro domain | [30-102] IPR000504 | 1.3e-23 | RNA recognition motif domain | |
| [24-111] IPR012677 | 1e-21 | Nucleotide-binding, alpha-beta plait | ||
| Orthology group | MCL15393 | Patchy | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS201506-TA
ATGTTGATGGCGGGCGCTCTGCCGGCCGAGTCCGATGGACTGCTGGCATTGGGTTCGCTCCCCGGCCAGAAAGACACCACCTGGACGAAACTGTTCGTCGGCGGCCTCCCATATCACACCACGGATAAGAGCCTAAGGGAACATTTCGCTGTTTACGGGGACATCGAGGAGGCTGTTGTCATTACAGACAGACAAACCAGCAAAAGCAGAGGATATGGTTTTGTAATAATGGGCGATCGGGCAGCTGCTGAACGCGCCTGCAAGGATCCCAACCCTATTATCGACGGCAGGAAAGCAAACGTCAACTTAGCAATCCTTGGAGCAAAGCCCAGAGGAAATTTGGCGCCAGAGGGGGAAGTAACAATGGGTGCGCGCGCGCATGACGGCCACCTGGCTGTGGCGTACCGGTCCTGCCATATGTCCCCTGTAATACACCGTGTACTGGAGCCAGGGGCTATAATGTTGGGGTGGTATGGGGGCCTCACTGCCCGTTACACATTATGA
>DPOGS201506-PA
MLMAGALPAESDGLLALGSLPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTSKSRGYGFVIMGDRAAAERACKDPNPIIDGRKANVNLAILGAKPRGNLAPEGEVTMGARAHDGHLAVAYRSCHMSPVIHRVLEPGAIMLGWYGGLTARYTL-