DPOGS201805 | ||
---|---|---|
Transcript | DPOGS201805-TA | 486 bp |
Protein | DPOGS201805-PA | 161 aa |
Genomic position | DPSCF300145 + 92131-92693 | |
RNAseq coverage | 404x (Rank: top 30%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL007042 | 2e-68 | 75.16% |   |
Bombyx | BGIBMGA013232-TA | 1e-62 | 84.09% |   |
Drosophila | CG1307-PC | 8e-32 | 55.93% |   |
EBI UniRef50 | UniRef50_Q9Y3E5 | 2e-38 | 52.23% | Peptidyl-tRNA hydrolase 2, mitochondrial n=47 Tax=Chordata RepID=PTH2_HUMAN |
NCBI RefSeq | XP_001657407.1 | 9e-37 | 63.79% | peptidyl-trna hydrolase [Aedes aegypti] |
NCBI nr blastp | gi|296201869 | 1e-38 | 50.00% | PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial-like [Callithrix jacchus] |
NCBI nr blastx | gi|134024335 | 1e-37 | 53.42% | hypothetical protein LOC549411 [Xenopus (Silurana) tropicalis] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0004045 | 4.7e-48 | aminoacyl-tRNA hydrolase activity | |
KEGG pathway |   | |||
InterPro domain | [46-161] IPR023476 | 1.3e-49 | Peptidyl-tRNA hydrolase II domain | |
[46-161] IPR002833 | 4.7e-48 | Peptidyl-tRNA hydrolase, PTH2 | ||
Orthology group | MCL14178 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS201805-TA
ATGGAATTAAATCTTACATTCCTTTCTGGGTTAGGATGCGGCCTTTGCCTCGGTTTATCTCTTTTTGCATTAAAAAAATACACGGGACTCTTTTCTGACACAGCAAAGTCTGTTAAAAAGTTTGTATCCAACTCCGAATATAAATTAGTATTGGTCGTTCGAACCGACCTGGGAATGGGAAAAGGCAAAATGGCTGCTCAATGTTGTCATGCGGCTGTTGGAGCCTTTGAGAAGGCAATCAAAAAGGATCCTGAAGGATTAAAGCACTGGCAGAAGACGGGACAAGCTAAAGTAGCTGTTAAAACGGATTCAGTAGATGAGATCAAACAAATTTTGGACAACGCCAAGAAATTGGGCATCATCACGTCTTTAATAAGGGATGCTGGAAGGACACAGATTGCACCCAACTCTATTACAGTGCTGGGTGTAGGTCCAGCACCCAAAGATGTAATCGATAAAGTTACCGGACATTTGAAGCTCCTGTAA
>DPOGS201805-PA
MELNLTFLSGLGCGLCLGLSLFALKKYTGLFSDTAKSVKKFVSNSEYKLVLVVRTDLGMGKGKMAAQCCHAAVGAFEKAIKKDPEGLKHWQKTGQAKVAVKTDSVDEIKQILDNAKKLGIITSLIRDAGRTQIAPNSITVLGVGPAPKDVIDKVTGHLKLL-