| DPOGS201878 | ||
|---|---|---|
| Transcript | DPOGS201878-TA | 582 bp |
| Protein | DPOGS201878-PA | 193 aa |
| Genomic position | DPSCF300191 + 239210-239884 | |
| RNAseq coverage | 21x (Rank: top 79%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL013093 | 2e-35 | 67.65% | |
| Bombyx | BGIBMGA006056-TA | 3e-35 | 68.27% | |
| Drosophila | CG4038-PA | 4e-19 | 45.63% | |
| EBI UniRef50 | UniRef50_B4MF26 | 1e-22 | 54.08% | GJ14866 n=1 Tax=Drosophila virilis RepID=B4MF26_DROVI |
| NCBI RefSeq | XP_397127.3 | 3e-26 | 56.00% | PREDICTED: similar to CG4038-PA [Apis mellifera] |
| NCBI nr blastp | gi|195064262 | 4e-24 | 51.79% | GH23995 [Drosophila grimshawi] |
| NCBI nr blastx | gi|156552396 | 9e-65 | 63.72% | PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like isoform 1 [Nasonia vitripennis] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0030515 | 3.5e-53 | snoRNA binding | |
| GO:0042254 | 3.5e-53 | ribosome biogenesis | ||
| GO:0009982 | 3.5e-53 | pseudouridine synthase activity | ||
| GO:0031429 | 3.5e-53 | box H/ACA snoRNP complex | ||
| GO:0031120 | 5.4e-16 | snRNA pseudouridine synthesis | ||
| KEGG pathway | ||||
| InterPro domain | [1-192] IPR021154 | 3.5e-53 | H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote | |
| [34-99] IPR007504 | 5.4e-16 | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 | ||
| [54-99] IPR009000 | 5.7e-09 | Translation elongation/initiation factor/Ribosomal, beta-barrel | ||
| Orthology group | ||||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS201878-TA
ATGTCCTTCCGCGGAAGAGGAGGCGGCGGCGGTCGTGGTGGATTTGGTGGCCGAGGCGGAGGAGGAGGCGGTGGCCGCGGATTTGGCGGAGGACGAGGACGCGGCGGCGGCGGCGGCGGCGGCTTCAGGTCATACCAAGACCAAGGCCCTCCAGAATCAGTTATTCCGCTCGGTCACTACGGATGGACTGTTCAAGATGACCTCGTGTGTAAAGTAGACATAGAAGACGTACCATACTTTAATGCACCCATCTTTCTTGAAAACAAGGAACAGATTGGTAAAATAGATGAGATATTCGCAAAATTATTGCCACTGAAGAGATTCCTACCTCAACCTCCTGGAGCTAAGAGGGGTGGTGGCCGCGGTGGTGGTGGTCGTGGAGGTAGAGGTGGTGGTGGCAGAGGCGGAGGTGGTGGCTTCGGACGAGGCGGTGGCGGAGGTTTCGGCCGGGGAGGAGGTGGAGGAAGGGGAGGAGGCTTTGGAAGAGGAGGAGGAGGTGGAGGAGGTTTTGGTAGAAGCGGTGGTGGCGGTGGTCGTGGAGGCAGAGGTGGTGGCTTCAAAGGAGGCCGTGGTGGAAGATAA
>DPOGS201878-PA
MSFRGRGGGGGRGGFGGRGGGGGGGRGFGGGRGRGGGGGGGFRSYQDQGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFAKLLPLKRFLPQPPGAKRGGGRGGGGRGGRGGGGRGGGGGFGRGGGGGFGRGGGGGRGGGFGRGGGGGGGFGRSGGGGGRGGRGGGFKGGRGGR-