| DPOGS201879 | ||
|---|---|---|
| Transcript | DPOGS201879-TA | 675 bp |
| Protein | DPOGS201879-PA | 224 aa |
| Genomic position | DPSCF300191 + 247190-247864 | |
| RNAseq coverage | 997x (Rank: top 13%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL013093 | 3e-58 | 97.06% | |
| Bombyx | BGIBMGA006056-TA | 8e-58 | 96.15% | |
| Drosophila | CG4038-PA | 2e-41 | 68.22% | |
| EBI UniRef50 | UniRef50_B4MF26 | 6e-40 | 74.49% | GJ14866 n=1 Tax=Drosophila virilis RepID=B4MF26_DROVI |
| NCBI RefSeq | XP_397127.3 | 7e-46 | 78.00% | PREDICTED: similar to CG4038-PA [Apis mellifera] |
| NCBI nr blastp | gi|340727582 | 8e-45 | 78.00% | PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like [Bombus terrestris] |
| NCBI nr blastx | gi|156552396 | 4e-83 | 73.01% | PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like isoform 1 [Nasonia vitripennis] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0030515 | 5.5e-91 | snoRNA binding | |
| GO:0042254 | 5.5e-91 | ribosome biogenesis | ||
| GO:0009982 | 5.5e-91 | pseudouridine synthase activity | ||
| GO:0031429 | 5.5e-91 | box H/ACA snoRNP complex | ||
| GO:0031120 | 1.1e-36 | snRNA pseudouridine synthesis | ||
| KEGG pathway | ||||
| InterPro domain | [1-223] IPR021154 | 5.5e-91 | H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote | |
| [34-185] IPR007504 | 1.1e-36 | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 | ||
| [54-129] IPR009000 | 2.5e-19 | Translation elongation/initiation factor/Ribosomal, beta-barrel | ||
| Orthology group | MCL15816 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS201879-TA
ATGTCCTTCCGCGGAAGAGGAGGCGGCGGCGGTCGTGGTGGATTTGGTGGCCGAGGCGGAGGAGGAGGCGGTGGCCGCGGATTTGGCGGAGGACGAGGACGCGGCGGCGGCGGCGGCGGCGGCTTCAGGTCATACCAAGACCAAGGCCCTCCAGAATCAGTTATTCCGCTCGGTCACTACGGATGGACTGTTCAAGATGACCTCGTGTGTAAAGTAGACATAGAAGACGTACCATACTTTAATGCACCCATCTTTCTTGAAAACAAGGAACAGATTGGTAAAATAGATGAGATATTCGGTAACTTGCGTGATTACTATGTGTCCGTGAAGCTCGGAGAGAACATTAAGGCAAAAAGTTTTAAGGAGGGACAACAATTTTTCATTGATCCAGCAAAATTATTGCCATTGAAGAGATTCCTACCTCAACCTCCTGGAGCTAAGAGAGGCGGTGGCCGAGGTGGTGGTGGTCGTGGAGGTAGAGGTGGTGGTGGCAGAGGCGGAGGTGGTGGCTTCGGACGAGGCGGTGGCGGAGGTTTCGGCAGGGGAGGAGGTGGAGGAAGGGGAGGAGGCTTTGGCAGAGGAGGAGGAGGTGGAGGAGGTTTTGGAAGAAGCGGTGGTGGTGGTGGTCGTGGAGGCAGAGGTGGTGGCTTCAAAGGAGGCCGTGGTGGAAGATAA
>DPOGS201879-PA
MSFRGRGGGGGRGGFGGRGGGGGGGRGFGGGRGRGGGGGGGFRSYQDQGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFGNLRDYYVSVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGAKRGGGRGGGGRGGRGGGGRGGGGGFGRGGGGGFGRGGGGGRGGGFGRGGGGGGGFGRSGGGGGRGGRGGGFKGGRGGR-