Monarch geneset OGS2.0

DPOGS201945
TranscriptDPOGS201945-TA1713 bp
ProteinDPOGS201945-PA570 aa
Genomic positionDPSCF300244 - 233802-252023
RNAseq coverage98x (Rank: top 61%)
Annotation
HeliconiusHMEL0038274e-16687.10% 
BombyxBGIBMGA006579-TA3e-9881.09% 
DrosophilaGluClalpha-PC1e-3625.00% 
EBI UniRef50UniRef50_Q17KW14e-10648.35%Glycine receptor beta, putative n=3 Tax=Culicidae RepID=Q17KW1_AEDAE
NCBI RefSeqXP_001944778.14e-10746.82%PREDICTED: similar to glycine receptor beta precursor, putative [Acyrthosiphon pisum]
NCBI nr blastpgi|1571202191e-10548.35%glycine receptor beta precursor, putative [Aedes aegypti]
NCBI nr blastxgi|1571202192e-10748.35%glycine receptor beta precursor, putative [Aedes aegypti]
Group
Gene OntologyGO:00160218.9e-130integral to membrane
GO:00068118.9e-130ion transport
GO:00160206.5e-31membrane
GO:00068106.5e-31transport
GO:00052306.5e-31extracellular ligand-gated ion channel activity
KEGG pathway 
InterPro domain[69-568] IPR0062018.9e-130Neurotransmitter-gated ion-channel
[113-314] IPR0062026.5e-31Neurotransmitter-gated ion-channel ligand-binding
[318-338] IPR0060281.1e-25Gamma-aminobutyric acid A receptor
[315-570] IPR0060292.7e-20Neurotransmitter-gated ion-channel transmembrane domain
Orthology groupMCL20451 Insect specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS201945-TA
ATGGACCGTTACGTCGTTATTAAAGGTGACTTGCGTCTTCGAGATACTCAAAAGGCTATACCGACAGATAACAACCATACTGATAGACGGACGAACGAGGTCTGGAATCTGACAGAGAATGGTTTCTGTCGAGGAGTAAATGGTGAGGATGCAAGTGTGTGTTGTGCGGGAGTGCGCGAGCGACGAGCGCCGCCGGGCCGCGCGCCCCTAGACATGTGGACGCAGCTGATGCCATTGCTGGCGCTCGTCGCGCTGGCGGATGGCGTTTCCTTCGCGCCTAACAAAGAACTGCTTGAATGTGCAAGCCAGATCCTGTATATGGACCAATACGCATACCAGCTTCCAACAAACTACAGTAGAAACATTCCACCTGGTAAAAATACGACAGTTTATATTGGAGTGAACGTCAATAGAGTTTCTGGAGTGGATGAAAATCGAGAGGAGATCACACTTGACGTTTTCCTGCAAGCATCATGGGAGGAGGCTAGATTAAAAGTTCCCCCCGGTATGCCTTTCATCGATCTACCCTGGGAATTCCGACAACTAATATGGACTCCGGATCTTTATATATGGCAGCTACAAACTATGAAAATTCTCTCAGTGCTCCAAGAAATGGCATCATTGAGACTATATGCTAATCGCACTGTCTCAGTCAGTATTGGTGCTACAATTACAATAAAATGTGAAATGAACTTTGTTTTGTATCCATTGGACGTGCAAAACTGCGCGATAGACTTTAGCAGCTATAAGTACACAAAAGAAGATGTGCGGTTCGAATGGCGTGAAGTGGCGCCGTGGTTCGGGCTGGCCGGCGAACAACGCCGAGAGTTTCGTCTGCCAAAATACGTGGTCACATTTGTTACCGACAAAAGTAATCATATTCGCAATTTTGGTGAAGGTGAACATTCAGCGGCGCGATTGCAAATAAAACTTTCGCGTGAACTGAGAGGGTATCTTCTAGAGAGCTACCTACCATCGTCCTTATTTGTCATCATCTCCTGGGGAAGCTTCTGCGTTATCCCGGAAATTGTTCCGGGTCGTATGGTGCTGCTTGTCACGACATTACTGTCACTTATTACTATGTTTGACACTGTCAGCACTAACTCACCGGACGCGTTAGAGCTAAAGTGTATCGAGGTTTGGCTGATCTCATGCACTATATTCGTATTCCTGGCACTGCTGGAGTACTTCGTGGTGTTGTTCGGCATCCGATATGACAAAAGTTGGAGCCGACGACGGCAAGACCTACGACGGGCCGCCTCTGCCGCGCAGCTGGCGCCGCCTCTGCATATTAACCATTCTCAAAATTTGCAGAGATTAGGCACACCTGTCACTGGCACGCCTCAAGGTGGAGTATTTTCACCGCAACTTAGTGTAGAAGATGAAGGATTAAAGCAACAGTTCTCTCACCAGACCATACAACGGTTAACATCTTCGGAGAGAAGGCTTCGAAGATCCAATAAAGTTGGATGTGAGACGAGAACAGTTAGTAAGGACTCGCCAATACTGGAGACAATGACAGCTGGTGATTCTTCGGGCAGTTTCTTGGTGAGACTTGCTGCCATGGTCGACCGCGGCGTCATGTTCTGTGGCGCCCAACACGGGGCACTTGACAAATTCGCCCTAATGATTTTTCCTATATGCTTTATACTCTTTACAATTATTTATTGGACGACATATATCAGTGAAGCATATCGGGCTATGCACGAGTGA

Protein sequence:

>DPOGS201945-PA
MDRYVVIKGDLRLRDTQKAIPTDNNHTDRRTNEVWNLTENGFCRGVNGEDASVCCAGVRERRAPPGRAPLDMWTQLMPLLALVALADGVSFAPNKELLECASQILYMDQYAYQLPTNYSRNIPPGKNTTVYIGVNVNRVSGVDENREEITLDVFLQASWEEARLKVPPGMPFIDLPWEFRQLIWTPDLYIWQLQTMKILSVLQEMASLRLYANRTVSVSIGATITIKCEMNFVLYPLDVQNCAIDFSSYKYTKEDVRFEWREVAPWFGLAGEQRREFRLPKYVVTFVTDKSNHIRNFGEGEHSAARLQIKLSRELRGYLLESYLPSSLFVIISWGSFCVIPEIVPGRMVLLVTTLLSLITMFDTVSTNSPDALELKCIEVWLISCTIFVFLALLEYFVVLFGIRYDKSWSRRRQDLRRAASAAQLAPPLHINHSQNLQRLGTPVTGTPQGGVFSPQLSVEDEGLKQQFSHQTIQRLTSSERRLRRSNKVGCETRTVSKDSPILETMTAGDSSGSFLVRLAAMVDRGVMFCGAQHGALDKFALMIFPICFILFTIIYWTTYISEAYRAMHE-