| DPOGS202024 | ||
|---|---|---|
| Transcript | DPOGS202024-TA | 876 bp |
| Protein | DPOGS202024-PA | 291 aa |
| Genomic position | DPSCF300053 - 828753-829628 | |
| RNAseq coverage | 89x (Rank: top 63%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL008047 | 7e-131 | 83.66% | |
| Bombyx | BGIBMGA009206-TA | 2e-115 | 74.09% | |
| Drosophila | SdhB-PA | 8e-86 | 56.25% | |
| EBI UniRef50 | UniRef50_Q09545 | 2e-77 | 53.17% | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=579 Tax=root RepID=DHSB_CAEEL |
| NCBI RefSeq | XP_002433069.1 | 4e-87 | 55.51% | succinate dehydrogenase, iron-sulfur subunit [Pediculus humanus corporis] |
| NCBI nr blastp | gi|242025311 | 8e-86 | 55.51% | succinate dehydrogenase, iron-sulfur subunit [Pediculus humanus corporis] |
| NCBI nr blastx | gi|321468348 | 7e-87 | 59.77% | hypothetical protein DAPPUDRAFT_231048 [Daphnia pulex] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006099 | 1e-70 | tricarboxylic acid cycle | |
| GO:0055114 | 1e-70 | oxidation-reduction process | ||
| GO:0016491 | 1e-70 | oxidoreductase activity | ||
| GO:0051536 | 2.1e-41 | iron-sulfur cluster binding | ||
| GO:0009055 | 2.7e-28 | electron carrier activity | ||
| KEGG pathway | phu:Phum_PHUM612230 | 1e-86 | ||
| K00235 (SDHB, SDH2) | maps-> | Huntington's disease | ||
| Citrate cycle (TCA cycle) | ||||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Parkinson's disease | ||||
| InterPro domain | [44-263] IPR004489 | 1e-70 | Succinate dehydrogenase/fumarate reductase iron-sulphur protein | |
| [139-266] IPR012285 | 2.1e-41 | Fumarate reductase, C-terminal | ||
| [139-271] IPR009051 | 4.7e-35 | Alpha-helical ferredoxin | ||
| [38-138] IPR012675 | 1.1e-31 | Beta-grasp fold, ferredoxin-type | ||
| [37-138] IPR001041 | 2.7e-28 | Ferredoxin | ||
| Orthology group | MCL25588 | Lepidoptera specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS202024-TA
ATGCACAGTATTAAGAAAGCAATATGTTCAAAACTGCCATGTTTGATATCAATAAGACTCTACTCGGGTCCAAAACCAGCAGCTGCCGCGGCTAAAAAGCCTTCGGATCCAAGAAAGGTGTTTAAAATTTACAGGTTTGGAGGAATTCTAAGTAATGAGAAACCAACATTAAAAAGTTACGATTTAGACATCAATACTTGCGGACGGATGGTTTTAGACGCTCTCATTAAAATTAAAGATATGGATCCTACGCTTGTATTTCGAAGATCCTGTCGTGAGGGTATCTGTGGGTCATGTGCTATTAATCTTCAAGGTCAAAATTGTCTCGCTTGTATAACTGCAATTCCTTCTGACAAAGTCATAACCATACATCCCATTCCTCATATGTATGTCATCAGGGATCTGGTCGTAGATATGACACATTTCTTTGATGTTTACAATAGCCTCCGTCCATATTTAATCCGAAACAATTCTGGGGCCCTCGGAAAATTTCAGTATGCACAAAGTGAGAAGGATAACTCCAAATTAGTTGGGCTGTACGAGTGTGTTCTGTGCTCTTGTTGTGCTACAGCTTGTCCTAGTTATTGGTGGAATGGCCGACGTTTCATGGGGCCAGCGTCTTTGCTTCACGCATACAGATGGATTATAGATTCTCGAGATGAAGAATCCGAACAAAGATTATTTGAACTACGAGATGACTTTAAAGCTTTTCGATGTCACACTATATATAATTGTACTCTGGCATGTCCTAAAGGATTACACCCAGCTCTAGCTATAGCAAAATTAAAAAGATTAATTTCAGGATTAGATAAAAAACCTTTACCCGAAATGGATCCTATGAAATTTGCTTCGGGTTCGCTGTCCGGTTGTAAATGA
>DPOGS202024-PA
MHSIKKAICSKLPCLISIRLYSGPKPAAAAAKKPSDPRKVFKIYRFGGILSNEKPTLKSYDLDINTCGRMVLDALIKIKDMDPTLVFRRSCREGICGSCAINLQGQNCLACITAIPSDKVITIHPIPHMYVIRDLVVDMTHFFDVYNSLRPYLIRNNSGALGKFQYAQSEKDNSKLVGLYECVLCSCCATACPSYWWNGRRFMGPASLLHAYRWIIDSRDEESEQRLFELRDDFKAFRCHTIYNCTLACPKGLHPALAIAKLKRLISGLDKKPLPEMDPMKFASGSLSGCK-