Monarch geneset OGS2.0

DPOGS202534
TranscriptDPOGS202534-TA6405 bp
ProteinDPOGS202534-PA2134 aa
Genomic positionDPSCF300131 + 535000-555908
RNAseq coverage264x (Rank: top 40%)
Annotation
HeliconiusHMEL0074280.090.41% 
BombyxBGIBMGA001557-TA0.087.36% 
Drosophilapara-PAN0.076.86% 
EBI UniRef50UniRef50_P355000.075.84%Sodium channel protein para n=322 Tax=cellular organisms RepID=SCNA_DROME
NCBI RefSeqNP_001136084.10.091.41%voltage-gated sodium channel alpha subunit [Bombyx mori]
NCBI nr blastpgi|2173305640.091.41%voltage-gated sodium channel alpha subunit [Bombyx mori]
NCBI nr blastxgi|2173305640.090.80%voltage-gated sodium channel alpha subunit [Bombyx mori]
Group
Gene OntologyGO:00052484.4e-66voltage-gated sodium channel activity
GO:00015184.4e-66voltage-gated sodium channel complex
GO:00068144.4e-66sodium ion transport
GO:00160203.5e-65membrane
GO:00550853.5e-65transmembrane transport
GO:00052163.5e-65ion channel activity
GO:00068113.5e-65ion transport
KEGG pathway 
InterPro domain[1056-1307] IPR0105264.4e-66Sodium ion transport-associated
[170-414] IPR0058213.5e-65Ion transport
[1876-1895] IPR0016968.4e-13Voltage gated sodium channel, alpha subunit
Orthology groupMCL10067 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS202534-TA
ATGTCCGAGGACTTGGACTCGATCAGCGAGGAAGAACGAAGCTTGTTCCGACCTTTCACCCGAGAATCATTGGCCGCTATCGAATCTCGCATAGCAGAAGAACATGCCAAGCAAAAGGAACTCGAGAAAAAACGAGCGGAAGGAGAGGTGCGTTATGATGACGAAGACGAAGATGAGGGTCCCCAACCAGACGCGACCCTGGAACAGGGCCTGCCACTGCCGGTCCGGATGCAAGGCTCCTTTCCGCTCGAACTGGCCTCCACCCCCCTCGAGGACATCGATCCCTTCTACCACAACCAAACAACTTTCGTAGTCATAAGCAAGGGTAAAGATATCTTCAGATTTTCGGCGACCAATGCCTTGTGGATATTGGATCCTTTCAATCCAATAAGAAGAGTGGCTATATACATTCTAGTACATCCTTTGTTCTCCCTATTTATTATAACCACGATTCTTGTGAACTGTATACTTATGATCATGCCTACCACGCCCACCGTTGAAAGTACTGAAGTTATCTTTACCGGAATCTACACCTTTGAATCGGCGGTGAAAGTAATGGCCAGGGGTTTCATACTACAGCCATTCACATACCTTAGAGATGCATGGAATTGGCTTGACTTCGTAGTTATAGCTTTAGCTTATGTGACGATGGGCATAGATCTCGGCAACTTGGCCGCTCTCAGAACATTCAGAGTTCTCCGAGCTTTGAAGACTGTGGCCATCGTACCGGGCTTGAAGACAATCGTTGGTGCTGTAATAGAGTCGGTAAAAAATCTGCGGGATGTGATCATTTTGACCATGTTTTCTCTATCTGTGTTTGCCTTAATGGGACTACAAATATATATGGGTGTGTTAACGCAGAAATGTATCAAGGTATTCCCCGAAGATGGCAGTTGGGGGAATCTAACCGACGAGAATTGGGAAAGGTTTTGTCAAAATGAAACAAACTGGTATGGCGGAGATGGAGAATACCCTCTGTGTGGAAATTCATCAGGAGCGGGGCAATGCGAACCAGGCTACATGTGTTTGCAAGGTTACGGTCCGAACCCTAATTATGGCTACACAAGTTTCGATACCTTTGGCTGGGCTTTTCTATCGGCCTTCCGTCTCATGACTCAGGATTATTGGGAGAATTTATATCAATTGGTGTTGAGATCGGCGGGCTCGTGGCACGTTTTGTTCTTCGTTGTGATCATCTTCTTAGGGTCGTTCTACCTCGTGAATCTGATCTTGGCCATCGTCGCCATGTCGTACGACGAGTTGCAAAAGAAAGCTGAAGAAGAGGAACAGGCGGAAGAGGAAGCACTTAGGGAAGCCGAGCAAAAAGCGGCAGCACGAGCGGATAAGCAGGAGGCACGAGAAGCACATGCTCGAGAGCAAGCGGCAGCAGCGGAAGCAGCAGCCTACGCAGAAGCACACCCCGCCAAGTCCCCCAGCGACTCCTCTTGTCAGAGCTACGAATTGTTCGTGAACCAGGAGCGCGGCAACCAGGATGACAATACGCGCGAGCGCATGTCCCTCCGTAGCGACCCCTTCCAAGATTCGGTGAGCACTCAGCCCACGCACAAGCCAACCGCCACCGAACAGCACCACGAACCGGCACGCCGTCAGAGGAAGGTCAGCATGGTTCCCCACCCTGAACGCATTAATAAATACGGACTGTTATCATATGGGCCACTGCGCGAAGGCTCGCAGGCTTCATTATCTCTACCCGGATCACCGTTCAATTTGAGGAGAGGTTCGAGGGGTTCACATCAAATGGCTTTAAGACCGAACGGAAGGAATCGCTATCCGCCCGGAGCTGATAGAAAACCATTGGTATTGTCAACATATTTGGATGCTCAAGAACATTTACCCTATGCAGACGATTCGAATGCTGTCACACCAATGTCAGAGGAAAATGGCGCAATCATAATACCAGTGTACTACGCCAATTTAGGCTCGAGGCACTCTTCCTACACATCCCACCAGTCCCGATTATCGTACACATCTCACGGGGACCTGTTAGGAGGCAAGGCGCAAACGAAGGAGGCCAGACTGAGAGGTCGATCGGCCTCCAGAAACCACAGTGTGACGTCACAACCGCACGCGTACCCTCTGCCACGCCAGGATTCATCACTGGCTTCTAGGCCACTTAGAGAATATGAAATAAGTACTACGGAGTCCACGGATGAGGCTGGTAAGGTTCTGAAACAGTCCAACGACAATCCATTCATAGAGTCCCAGAGACCAAACGTTGTGGATATGAGAGACGTCATGGTTTTGAATGAGATAATAGAGCAAGCCGGAAGACAGAGTCGAGCGAGTGAACAAAACGCGGAAGACGATGAGGATGGACCAACCTTCAAAGAGAGACTTCTGGAGTGCTTGATGAAGGGGATTGACTTCTTTTGTGTGTGGGACTGCTGTTGGTTGTGGTTGGAGTTCCAGAAATACGTGGCCCTGCTAGTGTTCGATCCTTTCGTGGAACTGTTTATAACCTTGTGTATTGTGGTCAACACTCTGTTCATGGCTCTGGACCATCACGACATGGACAAAGATATGGACAAAGCATTAAAGAGTGGAAACTATTTCTTCACAGCGACATTCGGAATAGAAGCGATGCTAAAGTTAATAGCCATGAGTCCAAAGTACTATTTTCAAGAAGGTTGGAACGTCTTCGATTTTATCATCGTCGCATTATCATTGCTAGAATTGGGTTTGGAAGGTGTACAGGGTTTGTCCGTATTGCGTTCATTTCGTTTGCTTCGAGTATTCAAATTGGCAAAGTCATGGCCGACACTTAATTTACTCATCTCTATAATGGGTAGGACGATGGGTGCCTTGGGCAACCTGACCTTCGTATTGTGCATCATTATTTTCATATTTGCCGTGATGGGTATGCAACTATTCGGGAAAAATTATGTGGACTATGTAGACCGGTTCCCTGATGGGGACCTTCCTCGGTGGAACTTCACAGACTTCATGCACAGCTTTATGATAGTCTTCAGAGTGCTTTGTGGGGAATGGATTGAGAGTATGTGGGATTGTATGCTTGTGGGTGACGTTTCCTGCATACCCTTCTTCCTAGCGACCGTCGTCATTGGCAATCTTGTCGTACTAAACCTCTTCTTGGCCCTGTTACTGTCAAACTTCGGATCATCGAATTTATCATCGCCAACAGCAGATCAAGATACGAATAAAATAGCAGAAGCTTTTAACCGGATATCTAGGTTTATAGACTGGGTTAAAAAAAGCGTTGCTGACATCTTGAAACTGGTGAAAAACAAGCTCACGAATCAGATTGCAATCCACGCTCCCGAACGCGTTGACAACGAACTGGAACTGGGTGCAGATATAGATGACGGAGTCCTCTACAAAGATAAGAAACTTAAAGACCAAGTGGAAGTTGCTATAGGTGATGGGATGGAATTTACAATACCCGGTGATAACAAATACAAAAAAGGTAAATTATTAATGAACAATATCAATGCTATAACGGACAACCATACGGATAACAGGATAAACTGTGAGCTAAATCATCACGGATATCCAATCCAGGACGATGATACCATTAGTCAAAAATCATATGGTAGTCATAAAATTAGGTCATTTAAAGACGAGAGCCATAAAGGATCGACTGACACCATAGACGGAGAAGAAAAGAAAGATGCTAGTAAAGAAGAATTAGGTTTAGAAGAAGAAATGATAGCAGAAGAGGAAGATGGTAAATTAGATCTAGCCAAAATAGACATCAAAGCCGGTGAAGGTGAGGTCATGGACTCGCCGGCCGACTGCTGTCCGGAGCCTTGCTATCAAAGGTTTCCATTTTTGGCTGGAGATGACGAATCACCGTTCTGGCAGGGCTGGGCTATGTTAAGACTCAAAACTTACAGACTTATTGAAAACACGTACTTCGAAACAGCTGTGATAACTATGATATTACTCAGTAGTTTGGCTTTGGCTTTAGAAGATGTTCATTTACCACATCGACCTATACTCCAAGACATATTATATTATATGGATCGAATCTTTACTGTAATATTCTTTATCGAGATGTTGATCAAGTGGCTCGCTCTAGGATTTCAGAAATACTTCACGAATGCTTGGTGCTGGCTCGACTTCATCATTGTCATGTTGTCGCTCGTTAACCACGGAGCCGTGATGGCGGGGGCGGACGACATCCCAGCTTTCCGTTCGATGCGTACTTTACGTGCACTTCGACCTCTGCGCGCTGTTTCCAGATGGGAAGGCATGCGCGTCTCGCTTATAAACTTCGTAGCGGCGCTTTGTGGCGCCGGTGGCATTCAGGCGTTCAAAACGATGCGAACGCTTCGAGCTCTCCGACCGCTCAGAGCTATGAGCCGCATGCAGGGCATGAGGGTGGTAGTGAACGCTCTGGTGCAAGCGATACCATCCATCTTCAATGTGCTGCTCGTGTGTCTAATATTCTGGCTTATTTTCGCTATAATGGGTGTACAACTCTTCGCCGGGAAATATTTTAAGTGTGTCGACATGAACCATACCACCTTAAGCCACGAAATAATACCAGACAGAAACGCGTGCATTTTAGAAAATTATACCTGGGAGAACTCACCAATGAATTTCGATCATGTTGGTAAAGCATATTTGTGCCTATTTCAAGTCGCCACTTTCAAAGGTTGGATTCAGATTATGAACGACGCTATTGATTCACGAGAGGTAGACCGACAACCCATCAGAGAGACGAACATATACATGTATTTATATTTTGTATTTTTCATCATCTTCGGATCTTTCTTCACTCTTAACCTATTCATTGGTGTGATCATCGATAACTTTAACGAGCAGAAGAAGAAAGCTGGAGGCAGTCTTGAAATGTTCATGACAGAGGATCAGAAGAAGTATTACAACGCCATGAAGAAAATGGGTTCCAAGAAACCACTGAAGGCCATACCAAGACCAAGATGGCGACCTCAAGCAATTGTATTCGAAATAGTAACGGATAAGAAATTCGACATGATTATCATGTTGTTCATTGGTCTGAACATGTTGACAATGACACTAGACCACTATCAGCAGTCAGACACGTTCAGCGCTGTCCTGGATTACCTTAACATGATATTCATAGTAATATTTAGTTCAGAGTGCCTGTTAAAAATTTTCGCCTTACGATACCATTACTTCGTGGAGCCTTGGAATTTATTCGATTTCGTCGTTGTGATGTTTTCTATACTCAGTTTGGTATTGAGTGATATTATAGAGAAGTACTTTGTGTCGCCTACTCTGTTAAGAGTAGTCAGAGTAGCAAAAGTTGGTCGAGTTCTTCGACTTGTGAAAGGAGCAAAGGGCATCCGAACGCTATTGTTCGCCTTAGCCATGTCACTGCCAGCTCTCTTCAATATTTGTTTACTATTGTTTCTAGTGATGTTTATCTTCGCAATATTTGGAATGTCATTTTTCATGCATGTGAAGGACAAAGGAGGCCTCGACGACGTGTACAATTTTAAAACTTTTGTGCAGAATATGTTTCATATGTCAACCTCAGCCGGTTGGGACGGAGTTCTCGACGGCATCATAAATGAGGAAGAGTGTGATCTGCCAGATAATGAGCGTGGTTACCCTGGAAACTGTGGATCGGCTACAATCGGGATCACTTACCTACTGTCCTACCTCGTAATATCTTTCCTCATTGTTATTAACATGTATATCGCTGTCATTCTCGAGAACTACTCTCAGGCAACGGAAGATGTACAAGAAGGCCTAACTGACGACGACTACGACATGTACTACGAAATATGGCAGCGATTCGATCCCGAGGGTACGCAATATATCAGATACGACCAACTGTCTGATTTCTTAGATGTGCTCGAACCGCCGTTGCAAATACACAAACCTAATAAGTACAAGATTATATCTATGGACATACCAATATGCCGCGGAGACATGATGTTCTGCGTGGACATCCTTGACGCACTCACGAAGGATTTCTTCGCGAGGAAGGGCAATCCCATCGAGGAGTCGGTGGAGGTTGGCCGGCCAGACGAGGTCGGGTACGAGCCCGTGTCGTCGACGTTGTGGCGACAGCGCGAGGAGTACTGTGCGCGGCTCATCCAGCATGCCTGGCGGCGGCATCGACGAGCGCAGTCCCCGACGGGCGCCTCGGTGACTGGATCGTGCGCTGGCGAGGCGGAAGGCGCGCCCACGGCCGTGCTACTGGACGCAGGCGGTGGTGCGGGCGGTGCGCATCGCGTGGTGCTGCAGGCAGCTGGTGCGGCGCCCCGGCCTCCTGAACCCGCGCCGCCGCCCGACGCCGCCCGCGCCCGTCTGACCCGCGCTGGCGCTCGCGCTGCTGCCCGCGCTGGTCGACGACGCGCCGCTGCCCCTGCCCGCACCGCTGCCCGAGCTCTTGAGCCCGCCCAAGCGCACTTGATTTTTTTACGCTGA

Protein sequence:

>DPOGS202534-PA
MSEDLDSISEEERSLFRPFTRESLAAIESRIAEEHAKQKELEKKRAEGEVRYDDEDEDEGPQPDATLEQGLPLPVRMQGSFPLELASTPLEDIDPFYHNQTTFVVISKGKDIFRFSATNALWILDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQKCIKVFPEDGSWGNLTDENWERFCQNETNWYGGDGEYPLCGNSSGAGQCEPGYMCLQGYGPNPNYGYTSFDTFGWAFLSAFRLMTQDYWENLYQLVLRSAGSWHVLFFVVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEQAEEEALREAEQKAAARADKQEAREAHAREQAAAAEAAAYAEAHPAKSPSDSSCQSYELFVNQERGNQDDNTRERMSLRSDPFQDSVSTQPTHKPTATEQHHEPARRQRKVSMVPHPERINKYGLLSYGPLREGSQASLSLPGSPFNLRRGSRGSHQMALRPNGRNRYPPGADRKPLVLSTYLDAQEHLPYADDSNAVTPMSEENGAIIIPVYYANLGSRHSSYTSHQSRLSYTSHGDLLGGKAQTKEARLRGRSASRNHSVTSQPHAYPLPRQDSSLASRPLREYEISTTESTDEAGKVLKQSNDNPFIESQRPNVVDMRDVMVLNEIIEQAGRQSRASEQNAEDDEDGPTFKERLLECLMKGIDFFCVWDCCWLWLEFQKYVALLVFDPFVELFITLCIVVNTLFMALDHHDMDKDMDKALKSGNYFFTATFGIEAMLKLIAMSPKYYFQEGWNVFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYVDYVDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMLVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSNLSSPTADQDTNKIAEAFNRISRFIDWVKKSVADILKLVKNKLTNQIAIHAPERVDNELELGADIDDGVLYKDKKLKDQVEVAIGDGMEFTIPGDNKYKKGKLLMNNINAITDNHTDNRINCELNHHGYPIQDDDTISQKSYGSHKIRSFKDESHKGSTDTIDGEEKKDASKEELGLEEEMIAEEEDGKLDLAKIDIKAGEGEVMDSPADCCPEPCYQRFPFLAGDDESPFWQGWAMLRLKTYRLIENTYFETAVITMILLSSLALALEDVHLPHRPILQDILYYMDRIFTVIFFIEMLIKWLALGFQKYFTNAWCWLDFIIVMLSLVNHGAVMAGADDIPAFRSMRTLRALRPLRAVSRWEGMRVSLINFVAALCGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCVDMNHTTLSHEIIPDRNACILENYTWENSPMNFDHVGKAYLCLFQVATFKGWIQIMNDAIDSREVDRQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDMIIMLFIGLNMLTMTLDHYQQSDTFSAVLDYLNMIFIVIFSSECLLKIFALRYHYFVEPWNLFDFVVVMFSILSLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKDKGGLDDVYNFKTFVQNMFHMSTSAGWDGVLDGIINEEECDLPDNERGYPGNCGSATIGITYLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQRFDPEGTQYIRYDQLSDFLDVLEPPLQIHKPNKYKIISMDIPICRGDMMFCVDILDALTKDFFARKGNPIEESVEVGRPDEVGYEPVSSTLWRQREEYCARLIQHAWRRHRRAQSPTGASVTGSCAGEAEGAPTAVLLDAGGGAGGAHRVVLQAAGAAPRPPEPAPPPDAARARLTRAGARAAARAGRRRAAAPARTAARALEPAQAHLIFLR-