DPOGS203027 | ||
---|---|---|
Transcript | DPOGS203027-TA | 540 bp |
Protein | DPOGS203027-PA | 179 aa |
Genomic position | DPSCF300068 + 530588-533721 | |
RNAseq coverage | 172x (Rank: top 50%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL011045 | 1e-26 | 53.21% |   |
Bombyx | BGIBMGA012265-TA | 2e-32 | 69.14% |   |
Drosophila | Snmp2-PC | 2e-21 | 36.23% |   |
EBI UniRef50 | UniRef50_D6WGA2 | 2e-27 | 36.65% | Putative uncharacterized protein n=1 Tax=Tribolium castaneum RepID=D6WGA2_TRICA |
NCBI RefSeq | XP_970008.1 | 4e-28 | 36.65% | PREDICTED: similar to scavenger receptor class B (AGAP005716-PA) [Tribolium castaneum] |
NCBI nr blastp | gi|91092044 | 6e-27 | 36.65% | PREDICTED: similar to scavenger receptor class B (AGAP005716-PA) [Tribolium castaneum] |
NCBI nr blastx | gi|91092044 | 5e-25 | 39.86% | PREDICTED: similar to scavenger receptor class B (AGAP005716-PA) [Tribolium castaneum] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0016020 | 1.3e-38 | membrane | |
GO:0007155 | 1.3e-38 | cell adhesion | ||
KEGG pathway | dre:436636 | 1e-15 |   | |
  | K06259 (CD36) | maps-> | Adipocytokine signaling pathway | |
  |   |   | Malaria | |
  |   |   | Phagosome | |
  |   |   | Hematopoietic cell lineage | |
  |   |   | ECM-receptor interaction | |
  |   |   | PPAR signaling pathway | |
InterPro domain | [20-172] IPR002159 | 1.3e-38 | CD36 antigen | |
Orthology group | MCL30918 |   | Lepidoptera specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS203027-TA
ATGATTTTGTCTATCAACCTGCTTACCAAGTCTCGCACTTGGCGAGAGACTCTACGCGATGTTTCTTCTGCAGGTGCGTTTTTGATTCTCTCCTACCCACACTTCCTGTATGCGGACTTCGCTTATAGGAATGGAGTCATAGGAATGAAGCCGTTTGAAGATAAACACAGGATCTTTGTTGATTTGGAACCAAACACGGGAACTGTGATCAGAGGGATGAAGCGGGCTCAGTTCAACGTGTTTATGCGTCCAGTAACGAGTATAACCAGCACTCAGAATCTACGTACCACGCTCATGCCGATATTCTGGGTGGAGGAGGGTATGGAGTTGCCTGAAGACTATGTAGACATGTTAACAACACGCATGCTGAACCGACTGCGCCTTGTTGATATCCTGATCCCGGTTCTGATAACGGTGTGCGCCCTCGTCGCTGTGCTGGGCGTGGTCATCCTGATACGAGTCAGATACGCGAAGAGGAACATCGCGCCTAGTAAATCAACCACTTCGATCACCCCCACTACTTATACGATTGACAATTAG
>DPOGS203027-PA
MILSINLLTKSRTWRETLRDVSSAGAFLILSYPHFLYADFAYRNGVIGMKPFEDKHRIFVDLEPNTGTVIRGMKRAQFNVFMRPVTSITSTQNLRTTLMPIFWVEEGMELPEDYVDMLTTRMLNRLRLVDILIPVLITVCALVAVLGVVILIRVRYAKRNIAPSKSTTSITPTTYTIDN-