| DPOGS203195 | ||
|---|---|---|
| Transcript | DPOGS203195-TA | 519 bp |
| Protein | DPOGS203195-PA | 172 aa |
| Genomic position | DPSCF300035 + 77107-85896 | |
| RNAseq coverage | 255x (Rank: top 41%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL013726 | 1e-16 | 66.15% | |
| Bombyx | BGIBMGA011413-TA | 7e-24 | 74.67% | |
| Drosophila | nau-PA | 8e-24 | 52.25% | |
| EBI UniRef50 | UniRef50_E5SR13 | 3e-25 | 53.33% | Cuticle collagen 1 n=1 Tax=Trichinella spiralis RepID=E5SR13_TRISP |
| NCBI RefSeq | NP_001158428.1 | 9e-25 | 46.72% | myogenic differentiation protein [Saccoglossus kowalevskii] |
| NCBI nr blastp | gi|339252146 | 8e-25 | 53.33% | cuticle collagen 1 [Trichinella spiralis] |
| NCBI nr blastx | gi|339252146 | 5e-24 | 53.33% | cuticle collagen 1 [Trichinella spiralis] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005634 | 6.2e-17 | nucleus | |
| GO:0006355 | 6.2e-17 | regulation of transcription, DNA-dependent | ||
| GO:0003677 | 7.5e-10 | DNA binding | ||
| GO:0007517 | 7.5e-10 | muscle organ development | ||
| KEGG pathway | ||||
| InterPro domain | [49-113] IPR011598 | 6.2e-17 | Helix-loop-helix DNA-binding | |
| [23-58] IPR002546 | 7.5e-10 | Myogenic basic muscle-specific protein | ||
| [59-109] IPR001092 | 1e-09 | Helix-loop-helix DNA-binding domain | ||
| Orthology group | MCL15188 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS203195-TA
ATGAGCTACAGCGCCATCTATGACTACAGTTTGGATTTACCGAAAAACAATGGGTGTTGTGATATAAAGGAGGAGGAAAAGAACGAGGAGCACATACAGCATGTGCTGGGACCCAGCAGACGATGTCTGGCCTGGGCCTGCAAGGCCTGCAAGAGAAAAACAGCAGCTGTTGACAGGCGGAAAGCGGCCACGCTACGTGAGAGAAGGAGATTAAGAAAAGTGAACGCTGCTTTCGAAGAGTTACGAATACGTGCTCGGGCTGGGAGTGGACGTCTGCCAAAGCTGGAGATACTCCGAGCAGCCATCCAGCACATTGAGAGGCTCCAAGCCGCCCTTAGAGCAGCAACCGCTCTGGACTCTGACAGCTGCAAGAACTACGCAGAGCCGGCGAGGAAGCCTGACAGCAAGCAAAGTAAAAATGAAAAGGAGAAGCCCTTCCTCAGCGGTGACCCAACGTGCGGGCTGAACAGTCTAGCGAGGTTGCGCTGCATCGTACAGGCTCTGGCAAATGAAACGTGA
>DPOGS203195-PA
MSYSAIYDYSLDLPKNNGCCDIKEEEKNEEHIQHVLGPSRRCLAWACKACKRKTAAVDRRKAATLRERRRLRKVNAAFEELRIRARAGSGRLPKLEILRAAIQHIERLQAALRAATALDSDSCKNYAEPARKPDSKQSKNEKEKPFLSGDPTCGLNSLARLRCIVQALANET-