DPOGS204797 | ||
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Transcript | DPOGS204797-TA | 624 bp |
Protein | DPOGS204797-PA | 207 aa |
Genomic position | DPSCF300460 - 92925-93805 | |
RNAseq coverage | 246x (Rank: top 42%) |
Annotation | ||||
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Heliconius | HMEL013183 | 3e-99 | 85.22% |   |
Bombyx | BGIBMGA010827-TA | 9e-93 | 82.74% |   |
Drosophila | Csl4-PA | 2e-42 | 48.65% |   |
EBI UniRef50 | UniRef50_E2A274 | 2e-56 | 60.00% | 3'-5' exoribonuclease CSL4-like protein n=11 Tax=Coelomata RepID=E2A274_CAMFO |
NCBI RefSeq | XP_624453.1 | 2e-57 | 59.46% | PREDICTED: similar to Csl4 CG6249-PA [Apis mellifera] |
NCBI nr blastp | gi|332018459 | 2e-56 | 58.92% | 3'-5' exoribonuclease CSL4-like protein [Acromyrmex echinatior] |
NCBI nr blastx | gi|350424034 | 1e-55 | 58.92% | PREDICTED: exosome complex component CSL4-like [Bombus impatiens] |
Group | ||||
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KEGG pathway | ame:552072 | 7e-57 |   | |
  | K07573 (CSL4, EXOSC1) | maps-> | RNA degradation | |
InterPro domain | [55-124] IPR019495 | 8e-22 | Exosome complex, component CSL4 | |
Orthology group | MCL13987 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS204797-TA
ATGAGGTTAAGTTCATCAGACAAAGGTCATTTAGCCGGACCGGGAACTTATGAATTAAAAGGTTATATCTATTCAATGTTGACTGGAGTGTTAAAAACCGAAGAAGATGAAGAAAGGAAGGCGACAAGAATATGTGTAGTTAGTCCAAGGACACCAAGTGTACTGCCAGTAACAGGGGATATTGTCACAGCTAAAGTAACTGTAGTTAATTCAAGACAAGTGAATTGTATCATTCTCTGTGTAGGTCCATCTCCTCTGGTCAGGCCTTATAGAGGAATCCTCAAAAAGGAAGATATAAAATTCACAGATAAAGATAGAATAGATCCATATAAATGTTTCAGACCAGGCGACATTATATTGGCAAGAGTTTTGCCCATGACTGAAATACATTGGTATCATCTGTCTACTGCGGAAAATGAACTTGGAGTGGTGATTGCAACTGCCGAGGGTTCACCTCAAGGAATAAGTATGGTGCCTATAAGCTGGTCTGAAATGCAATGTCCGAAAACTCTTGCTAAAGAACCTAGAAAAGTGGCCAGAGTTATACCGGAAAATATAAACCAAGCTCTATTTCCAGTGGATTCTAAGGAACCACAGAAAGAAAATGGCATTGGAAATAAATAG
>DPOGS204797-PA
MRLSSSDKGHLAGPGTYELKGYIYSMLTGVLKTEEDEERKATRICVVSPRTPSVLPVTGDIVTAKVTVVNSRQVNCIILCVGPSPLVRPYRGILKKEDIKFTDKDRIDPYKCFRPGDIILARVLPMTEIHWYHLSTAENELGVVIATAEGSPQGISMVPISWSEMQCPKTLAKEPRKVARVIPENINQALFPVDSKEPQKENGIGNK-