DPOGS205004 | ||
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Transcript | DPOGS205004-TA | 399 bp |
Protein | DPOGS205004-PA | 132 aa |
Genomic position | DPSCF300123 + 274730-275417 | |
RNAseq coverage | 2120x (Rank: top 6%) |
Annotation | ||||
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Heliconius | HMEL009464 | 1e-66 | 96.97% |   |
Bombyx | BGIBMGA010234-TA | 5e-55 | 90.15% |   |
Drosophila | RpII18-PA | 7e-43 | 83.50% |   |
EBI UniRef50 | UniRef50_Q24320 | 9e-41 | 83.50% | DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=29 Tax=Eukaryota RepID=RPAB2_DROME |
NCBI RefSeq | NP_001040147.1 | 2e-53 | 90.15% | DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori] |
NCBI nr blastp | gi|114050977 | 5e-52 | 90.15% | DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori] |
NCBI nr blastx | gi|114050977 | 5e-63 | 90.84% | DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0003899 | 1.4e-74 | DNA-directed RNA polymerase activity | |
GO:0003677 | 1.4e-74 | DNA binding | ||
GO:0006351 | 1.4e-74 | transcription, DNA-dependent | ||
GO:0030880 | 2.8e-50 | RNA polymerase complex | ||
KEGG pathway | ame:410494 | 3e-49 |   | |
  | K03014 (RPB6) | maps-> | Huntington's disease | |
  |   |   | Purine metabolism | |
  |   |   | Pyrimidine metabolism | |
  |   |   | RNA polymerase | |
InterPro domain | [2-132] IPR006111 | 1.4e-74 | DNA-directed RNA polymerase, subunit K/RPABC2 | |
[15-130] IPR012293 | 2.8e-50 | RNA polymerase subunit, RPB6/omega | ||
[3-131] IPR006110 | 2.2e-47 | RNA polymerase, subunit omega/K/RPABC2 | ||
Orthology group | MCL13200 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS205004-TA
ATGGCGGACGAGGAATTCGATGGAGAGGATGGGGGAGGAGATTATGACGACATTGTTGAAGAAGACAATAACATAGAAGAGGTTGAGGAACAAGAGGAAGATGGTTATAATGTTCAGTGTTTAGCTCCAGGGCAAGCCGGTGGTGGAGTAGAGAAATCTAAACGGATCACGACTAGATATATGACAAAATATGAAAGGGCAAGAGTATTAGGTACGAGAGCATTGCAAATAGCTATGTGCGCCCCCGTCATGGTGGAACTGGAAGGTGAAACCGACCCATTACAAATTGCAATGAAGGAATTGAAGCAGAGAAAGATTCCCATAATCATCCGAAGATATCTCCCTGACCACTCTTACGAAGATTGGAGTATAGATGAACTCATTATAATAGATCATTAG
>DPOGS205004-PA
MADEEFDGEDGGGDYDDIVEEDNNIEEVEEQEEDGYNVQCLAPGQAGGGVEKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDHSYEDWSIDELIIIDH-