DPOGS205351 | ||
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Transcript | DPOGS205351-TA | 978 bp |
Protein | DPOGS205351-PA | 325 aa |
Genomic position | DPSCF300295 + 108289-109906 | |
RNAseq coverage | 367x (Rank: top 32%) |
Annotation | ||||
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Heliconius | HMEL006156 | 1e-107 | 68.49% |   |
Bombyx | BGIBMGA007263-TA | 5e-99 | 57.91% |   |
Drosophila | CG13096-PA | 2e-30 | 31.38% |   |
EBI UniRef50 | UniRef50_E2B9B7 | 1e-53 | 40.54% | Ribosomal L1 domain-containing protein 1 n=8 Tax=Formicidae RepID=E2B9B7_HARSA |
NCBI RefSeq | XP_623930.2 | 2e-54 | 40.85% | PREDICTED: similar to ribosomal L1 domain containing 1 [Apis mellifera] |
NCBI nr blastp | gi|383854114 | 9e-56 | 41.46% | PREDICTED: ribosomal L1 domain-containing protein 1-like [Megachile rotundata] |
NCBI nr blastx | gi|383854114 | 4e-55 | 39.87% | PREDICTED: ribosomal L1 domain-containing protein 1-like [Megachile rotundata] |
Group | ||||
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Gene Ontology | GO:0003723 | 2.1e-35 | RNA binding | |
GO:0015934 | 2.1e-35 | large ribosomal subunit | ||
GO:0006412 | 2.1e-35 | translation | ||
GO:0003735 | 2.1e-35 | structural constituent of ribosome | ||
GO:0005840 | 2.8e-07 | ribosome | ||
GO:0005622 | 2.8e-07 | intracellular | ||
KEGG pathway | dpo:Dpse_GA12044 | 8e-29 |   | |
  | K06670 (SCC1, MCD1, RAD21) | maps-> | Cell cycle - yeast | |
  |   |   | Cell cycle | |
InterPro domain | [19-235] IPR002143 | 2.1e-35 | Ribosomal protein L1 | |
[5-241] IPR023674 | 3e-32 | Ribosomal protein L1, superfamily | ||
[176-241] IPR016094 | 2.8e-07 | Ribosomal protein L1, 2-layer alpha/beta-sandwich | ||
Orthology group | MCL13709 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS205351-TA
ATGCCTTCTAAAGCGGTTACAGATGAGATCGTAATCTCGGCTTTAACTGCCTTAGAAAAATTAACAGCTCATACTTCTAACAAAAATATTATATTTGGTGACGAACATCAAATATTCATGGAGATTCGATGCATTAAAATACCACACTCTAAAGGGAACATCAAATTTGTACTCCCGCACAGTACAGTATTATCATCTAAGGAGGTTTGCCTTGTAACACCAGACATCAAGAAAGGAAAGAAAGTGGATCATGAGCCTACTGTAGACAAATGGGAGGAATTGCTCCGAGGAGCCGGAGTTACCAGTGTCAAGACCATCCTCCCTATGAGGCAACTAAGAGTGGAGTATGACCAGTTTGAATTGAAGCGCAGATTGTTGACTCAACATGACTTCATAATGGTCGACACAAGAGTTCTAAACCACGTGTCTCACATCTTGGGAAAGATGTTCTTCAAGAAACACAATATGTTGATACCCGTCAAGATAGATGAAACGAAAGATGTCAAGAAAGATATTGATGTTGGCTTAAGGACTGTCATGTTGAGAATCAGTGCGGGTCAAACTACCACCATAGTTGTCGGACACACCGGCATGCAGCAGAATGATATTAAGGAAAACATTTTAGCGGTTGTCAATATGTTGAATAAGAAGTTTCCAGGCGGCGAAGCTAACATCAGAGGTCTAGCTATAAAGCTACCATTGTCACTTTCTCTGCCAATATATATGACACTGAGGCCAGGCAGTTCTGTAAAAACGGTGCCAAAACTTAAACACCCTAAGCCAAAGTCACATGTTATGTATGAGGATGAGTTATCAACTCATCTCAGGAGTACTGTGAGAGTCAATCCCGATGGAACTGTTAAATTGAAATTACAGCCACAGAAAAAAAAAGAAAGAATTGTGGAAGATGACATTCTAAGTGATGGTGATGACAATCAAGAAGATGATGAAATGGATGATGATGGTGATGAAGAATGA
>DPOGS205351-PA
MPSKAVTDEIVISALTALEKLTAHTSNKNIIFGDEHQIFMEIRCIKIPHSKGNIKFVLPHSTVLSSKEVCLVTPDIKKGKKVDHEPTVDKWEELLRGAGVTSVKTILPMRQLRVEYDQFELKRRLLTQHDFIMVDTRVLNHVSHILGKMFFKKHNMLIPVKIDETKDVKKDIDVGLRTVMLRISAGQTTTIVVGHTGMQQNDIKENILAVVNMLNKKFPGGEANIRGLAIKLPLSLSLPIYMTLRPGSSVKTVPKLKHPKPKSHVMYEDELSTHLRSTVRVNPDGTVKLKLQPQKKKERIVEDDILSDGDDNQEDDEMDDDGDEE-