DPOGS205415 | ||
---|---|---|
Transcript | DPOGS205415-TA | 633 bp |
Protein | DPOGS205415-PA | 210 aa |
Genomic position | DPSCF300407 + 253214-257530 | |
RNAseq coverage | 3517x (Rank: top 3%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL007151 | 5e-60 | 63.81% |   |
Bombyx | BGIBMGA001584-TA | 2e-68 | 99.24% |   |
Drosophila | Tm1-PE | 6e-40 | 57.06% |   |
EBI UniRef50 | UniRef50_F4WSG5 | 6e-67 | 85.80% | Tropomyosin n=6 Tax=Bilateria RepID=F4WSG5_ACREC |
NCBI RefSeq | NP_001103783.1 | 2e-67 | 98.51% | tropomyosin-2 isoform 3 [Bombyx mori] |
NCBI nr blastp | gi|270000774 | 1e-81 | 84.76% | hypothetical protein TcasGA2_TC011019 [Tribolium castaneum] |
NCBI nr blastx | gi|270000774 | 1e-88 | 84.76% | hypothetical protein TcasGA2_TC011019 [Tribolium castaneum] |
Group | ||||
---|---|---|---|---|
KEGG pathway | ame:408583 | 1e-39 |   | |
  | K10373 (TPM1) | maps-> | Dilated cardiomyopathy | |
  |   |   | Cardiac muscle contraction | |
  |   |   | Hypertrophic cardiomyopathy (HCM) | |
InterPro domain | [16-133] IPR000533 | 1.7e-37 | Tropomyosin | |
Orthology group | MCL11141 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS205415-TA
ATGACGACGAATATGCAACAAGGAACCATTTTAGATGTTCTTAAAAAGAAAATGCGTCAAACTAAAGAAGAAATGGAGAAATATAAAGACGAATGTGAGGAGTATCACAAACGATTACAAGTGGAAATAATGCGGAGAGAAGAAGCCGAGTCCGAGGTCGCAGCTCTTAACAGACGCATCCAATTGCTGGAGGAGGACCTTGAGAGGTCTGAGGAGCGTCTCGCCACCGCTACCGCTAAGCTCGCCGAGGCCAGCCAGGCAGCTGATGAGTCCGAACGAATACGCAAGGCGTTGGAGAATCGTACCAATATGGAGGACGACCGCGTCGCCATTTTGGAAGCTCAACTGTCACAGGCGAAGCTCATCGCTGAGGAGTCTGACAAGAAATACGAAGAGGATGCTGCGTCCTCTATAACTTCTTCTCCAGCAGGTATTCTCCACGCCCGCAAGGTTTTGGAGAACAGGTCGCTGGCTGATGAAGAACGTATGGACGCTCTGGAGAACCAGCTGAAGGAGGCCAGGTTCCTCGCTGAGGAGGCCGACAAGAAATACGATGAGGTCGCTCGTAAGCTGGCCATGGTTGAAGCTGATCTGGAGCGTGCCGAGGAACGCGCCGAGGCTGGCGAATCGTAG
>DPOGS205415-PA
MTTNMQQGTILDVLKKKMRQTKEEMEKYKDECEEYHKRLQVEIMRREEAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEDAASSITSSPAGILHARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAEERAEAGES-