DPOGS205845 | ||
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Transcript | DPOGS205845-TA | 792 bp |
Protein | DPOGS205845-PA | 263 aa |
Genomic position | DPSCF300081 + 22526-25712 | |
RNAseq coverage | 43097x (Rank: top 0%) |
Annotation | ||||
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Heliconius | HMEL009926 | 2e-145 | 87.54% |   |
Bombyx | BGIBMGA010867-TA | 4e-138 | 97.14% |   |
Drosophila | RpS4-PB | 6e-127 | 81.85% |   |
EBI UniRef50 | UniRef50_P41042 | 7e-125 | 81.85% | 40S ribosomal protein S4 n=199 Tax=root RepID=RS4_DROME |
NCBI RefSeq | NP_001037257.1 | 4e-148 | 97.34% | 40S ribosomal protein S4 [Bombyx mori] |
NCBI nr blastp | gi|315115407 | 2e-149 | 98.86% | ribosomal protein S4 [Euphydryas aurinia] |
NCBI nr blastx | gi|315115407 | 4e-148 | 98.86% | ribosomal protein S4 [Euphydryas aurinia] |
Group | ||||
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Gene Ontology | GO:0005840 | 7.9e-221 | ribosome | |
GO:0006412 | 7.9e-221 | translation | ||
GO:0005622 | 7.9e-221 | intracellular | ||
GO:0003735 | 7.9e-221 | structural constituent of ribosome | ||
GO:0003723 | 1.7e-08 | RNA binding | ||
KEGG pathway | tca:657727 | 3e-132 |   | |
  | K02987 (RP-S4e, RPS4) | maps-> | Ribosome | |
InterPro domain | [2-263] IPR000876 | 7.9e-221 | Ribosomal protein S4e | |
[87-181] IPR013845 | 4e-48 | Ribosomal protein S4e, central | ||
[3-40] IPR013843 | 1.6e-20 | Ribosomal protein S4e, N-terminal | ||
[43-90] IPR002942 | 1.7e-08 | RNA-binding S4 | ||
[178-211] IPR005824 | 4.4e-06 | KOW | ||
Orthology group | MCL15166 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS205845-TA
ATGGCTCGTGGACCTAAAAAGCATTTGAAGCGTTTAAACGCGCCCAAGGCATGGATGTTGGACAAACTGGGTGGTGTGTACGCACCACGGCCCTCCACCGGTCCACACAAGTTGCGAGAGTGTTTGCCACTTGTTATTTTTCTACGTAACCGCCTGAAGTACGCCCTAACCGGCAATGAGGTACTGAAAATTGTAAAGCAGCGTCTAATCAAGGTCGATGGCAAAGTCAGAACTGATCCGACCTACCCCGCTGGCTTTATGGATGTTGTATCAATTGAGAAGACAAACGAACTGTTCCGTCTGATCTATGATGTCAAGGGTAGATTCACTATTCACAGGATAACTCCCGAGGAGGCCAAGTACAAGCTGTGCAAGGTCCGCCATGTCGGTACTGGTCCCAAGAACGTACCATACCTTGTGACGCACGATGGCCGTACCATCCGTTACCCGGATCCACTCATTAAGGTCAATGACTCCATCCAACTGGACATTGCCTCGTCCAAGATTATGGACTTCATCAAGTTTGAGTCTGGTAACCTGTGCATGATCACCGGAGGTCGTAACTTGGGTCGTGTGGGCACCATCGTGTCCCGTGAGCGTCACCCCGGTTCCTTCGACATTGTACACATCAAGGACTCTATGGGACATACTTTTGCTACCAGATTGAACAACGTGTTCATCATCGGCAAAGGCACGAAGGCTTACATTTCTCTGCCACGCGGTAAAGGTATCCGCCTCACCATCGCCGAGGAGCGCGACAAGCGCATCGCAGCGAAGGTCGCCGCGCACTAG
>DPOGS205845-PA
MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRHVGTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIASSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSMGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAKVAAH-