DPOGS206113 | ||
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Transcript | DPOGS206113-TA | 858 bp |
Protein | DPOGS206113-PA | 285 aa |
Genomic position | DPSCF300028 + 602496-604610 | |
RNAseq coverage | 29101x (Rank: top 0%) |
Annotation | ||||
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Heliconius | HMEL014068 | 7e-87 | 93.00% |   |
Bombyx | % |   | ||
Drosophila | RpL23A-PA | 3e-62 | 76.26% |   |
EBI UniRef50 | UniRef50_P62750 | 1e-47 | 75.40% | 60S ribosomal protein L23a n=332 Tax=cellular organisms RepID=RL23A_HUMAN |
NCBI RefSeq | XP_967229.1 | 2e-69 | 80.00% | PREDICTED: similar to ribosomal protein L23Ae isoform 1 [Tribolium castaneum] |
NCBI nr blastp | gi|315115345 | 2e-100 | 88.54% | ribosomal protein L23A [Euphydryas aurinia] |
NCBI nr blastx | gi|342356331 | 2e-142 | 92.10% | ribosomal protein L23A [Heliconius melpomene cythera] |
Group | ||||
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Gene Ontology | GO:0000166 | 1.5e-31 | nucleotide binding | |
GO:0005840 | 1.2e-28 | ribosome | ||
GO:0006412 | 1.2e-28 | translation | ||
GO:0005622 | 1.2e-28 | intracellular | ||
GO:0003735 | 1.2e-28 | structural constituent of ribosome | ||
KEGG pathway | tca:661617 | 6e-69 |   | |
  | K02893 (RP-L23Ae, RPL23A) | maps-> | Ribosome | |
InterPro domain | [202-285] IPR012677 | 1.5e-31 | Nucleotide-binding, alpha-beta plait | |
[209-285] IPR019985 | 1.2e-28 | Ribosomal protein L23 | ||
[202-279] IPR012678 | 2.2e-27 | Ribosomal protein L23/L15e | ||
[145-197] IPR005633 | 6.1e-20 | Ribosomal protein L23/L25, N-terminal | ||
[203-281] IPR013025 | 6.1e-18 | Ribosomal protein L25/L23 | ||
Orthology group | MCL11477 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS206113-TA
ATGCCTCCTAAGAAGCAACCAGAGAAATCCGGGGCGCCAGGGGCTAAGCCCGCTGAAAAGAAACCCGCTTCCGCTAAAACTCCAGCGGCGGCACCCAAGGCTGCATCTGCAAGTAGTAGCGCTGCTAAACCAGCATCCGCTAAAACCCCTGCACCTGCGCCGAAAGCTGCAGCACCTAAAGCTGCATCTGCTGCCAAGGCTGCACCAGCTAAAGCGGCTCCCGCTGCCAAGCCTGCTGAAAAGAAACCAGCATCTGCACCCTCTGCTAAGCCAGGCTCTGCTAAGGCAGCAGCTCTTAAGGCTAAGTCTAGTGCCAAGCCCTCTGTGAAGAAGGCTGCATCCAAAGCAGTCAAGCCCAAACCAGCAGCGGCTAAACTTAAGATTGCACCCAAGCCTAAGAAGACTGGCATCAAGGGACAGAAGAAAGTTGTTAAACCAGTTGTAAAAGCCCTTAAAGTTCAACGTAAGGTTGTCAAAGGTGAACATGGAAAGCGTGTACGTAAGATCCGCACATCTGTGCACTTCCGCAGACCCAAGACTTTTGAACCTCCAAGGAATCCTAAATACCCAAGGAAGTCATTACCGAAGAGGAACCGTATGGATGCATACAACATTATTAAATATCCGTTGACATCTGAAGCCGCCATGAAGAAGATTGAGGACAACAATACCTTGGTATTCATTGTTCACACCAGCTCCAACAAGCACCACATCAAAGCAGCTGTGAAGAAGCTTTATGACATCAATGTGGCTAAAGTGAACACCCTTATCCGACCTGATGGCAAAAAGAAGGCGTATGTACGACTCGCAAGAGACTACGACGCGTTAGACGTTGCCAATAAGATTGGAATCATATAA
>DPOGS206113-PA
MPPKKQPEKSGAPGAKPAEKKPASAKTPAAAPKAASASSSAAKPASAKTPAPAPKAAAPKAASAAKAAPAKAAPAAKPAEKKPASAPSAKPGSAKAAALKAKSSAKPSVKKAASKAVKPKPAAAKLKIAPKPKKTGIKGQKKVVKPVVKALKVQRKVVKGEHGKRVRKIRTSVHFRRPKTFEPPRNPKYPRKSLPKRNRMDAYNIIKYPLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII-