| DPOGS206113 | ||
|---|---|---|
| Transcript | DPOGS206113-TA | 858 bp |
| Protein | DPOGS206113-PA | 285 aa |
| Genomic position | DPSCF300028 + 602496-604610 | |
| RNAseq coverage | 29101x (Rank: top 0%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL014068 | 7e-87 | 93.00% | |
| Bombyx | % | |||
| Drosophila | RpL23A-PA | 3e-62 | 76.26% | |
| EBI UniRef50 | UniRef50_P62750 | 1e-47 | 75.40% | 60S ribosomal protein L23a n=332 Tax=cellular organisms RepID=RL23A_HUMAN |
| NCBI RefSeq | XP_967229.1 | 2e-69 | 80.00% | PREDICTED: similar to ribosomal protein L23Ae isoform 1 [Tribolium castaneum] |
| NCBI nr blastp | gi|315115345 | 2e-100 | 88.54% | ribosomal protein L23A [Euphydryas aurinia] |
| NCBI nr blastx | gi|342356331 | 2e-142 | 92.10% | ribosomal protein L23A [Heliconius melpomene cythera] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0000166 | 1.5e-31 | nucleotide binding | |
| GO:0005840 | 1.2e-28 | ribosome | ||
| GO:0006412 | 1.2e-28 | translation | ||
| GO:0005622 | 1.2e-28 | intracellular | ||
| GO:0003735 | 1.2e-28 | structural constituent of ribosome | ||
| KEGG pathway | tca:661617 | 6e-69 | ||
| K02893 (RP-L23Ae, RPL23A) | maps-> | Ribosome | ||
| InterPro domain | [202-285] IPR012677 | 1.5e-31 | Nucleotide-binding, alpha-beta plait | |
| [209-285] IPR019985 | 1.2e-28 | Ribosomal protein L23 | ||
| [202-279] IPR012678 | 2.2e-27 | Ribosomal protein L23/L15e | ||
| [145-197] IPR005633 | 6.1e-20 | Ribosomal protein L23/L25, N-terminal | ||
| [203-281] IPR013025 | 6.1e-18 | Ribosomal protein L25/L23 | ||
| Orthology group | MCL11477 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS206113-TA
ATGCCTCCTAAGAAGCAACCAGAGAAATCCGGGGCGCCAGGGGCTAAGCCCGCTGAAAAGAAACCCGCTTCCGCTAAAACTCCAGCGGCGGCACCCAAGGCTGCATCTGCAAGTAGTAGCGCTGCTAAACCAGCATCCGCTAAAACCCCTGCACCTGCGCCGAAAGCTGCAGCACCTAAAGCTGCATCTGCTGCCAAGGCTGCACCAGCTAAAGCGGCTCCCGCTGCCAAGCCTGCTGAAAAGAAACCAGCATCTGCACCCTCTGCTAAGCCAGGCTCTGCTAAGGCAGCAGCTCTTAAGGCTAAGTCTAGTGCCAAGCCCTCTGTGAAGAAGGCTGCATCCAAAGCAGTCAAGCCCAAACCAGCAGCGGCTAAACTTAAGATTGCACCCAAGCCTAAGAAGACTGGCATCAAGGGACAGAAGAAAGTTGTTAAACCAGTTGTAAAAGCCCTTAAAGTTCAACGTAAGGTTGTCAAAGGTGAACATGGAAAGCGTGTACGTAAGATCCGCACATCTGTGCACTTCCGCAGACCCAAGACTTTTGAACCTCCAAGGAATCCTAAATACCCAAGGAAGTCATTACCGAAGAGGAACCGTATGGATGCATACAACATTATTAAATATCCGTTGACATCTGAAGCCGCCATGAAGAAGATTGAGGACAACAATACCTTGGTATTCATTGTTCACACCAGCTCCAACAAGCACCACATCAAAGCAGCTGTGAAGAAGCTTTATGACATCAATGTGGCTAAAGTGAACACCCTTATCCGACCTGATGGCAAAAAGAAGGCGTATGTACGACTCGCAAGAGACTACGACGCGTTAGACGTTGCCAATAAGATTGGAATCATATAA
>DPOGS206113-PA
MPPKKQPEKSGAPGAKPAEKKPASAKTPAAAPKAASASSSAAKPASAKTPAPAPKAAAPKAASAAKAAPAKAAPAAKPAEKKPASAPSAKPGSAKAAALKAKSSAKPSVKKAASKAVKPKPAAAKLKIAPKPKKTGIKGQKKVVKPVVKALKVQRKVVKGEHGKRVRKIRTSVHFRRPKTFEPPRNPKYPRKSLPKRNRMDAYNIIKYPLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII-