DPOGS206276 | ||
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Transcript | DPOGS206276-TA | 360 bp |
Protein | DPOGS206276-PA | 119 aa |
Genomic position | DPSCF300290 + 33909-34533 | |
RNAseq coverage | 1076x (Rank: top 12%) |
Annotation | ||||
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Heliconius | HMEL013177 | 2e-64 | 97.48% |   |
Bombyx | BGIBMGA010723-TA | 3e-59 | 99.08% |   |
Drosophila | SmD2-PA | 2e-44 | 87.83% |   |
EBI UniRef50 | UniRef50_D7U296 | 4e-43 | 81.13% | Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=D7U296_VITVI |
NCBI RefSeq | NP_001077096.1 | 3e-56 | 96.64% | small nuclear ribonucleoprotein sm d2 [Bombyx mori] |
NCBI nr blastp | gi|134948671 | 9e-55 | 96.64% | small nuclear ribonucleoprotein sm d2 [Bombyx mori] |
NCBI nr blastx | gi|134948671 | 4e-59 | 96.64% | small nuclear ribonucleoprotein sm d2 [Bombyx mori] |
Group | ||||
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KEGG pathway | ame:414039 | 1e-49 |   | |
  | K11096 (SNRPD2, SMD2) | maps-> | Spliceosome | |
InterPro domain | [26-117] IPR010920 | 5.8e-23 | Like-Sm ribonucleoprotein (LSM)-related domain | |
[32-110] IPR006649 | 8.2e-19 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
[37-108] IPR001163 | 1.1e-17 | Like-Sm ribonucleoprotein (LSM) domain | ||
Orthology group | MCL12530 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS206276-TA
ATGGCGACTACATCGAAGCCACGCTCAGAAATGACTCTAGAAGAGCTAGCTAAGATAGAAGAGGAAGAATTCAGCACAGGTCCGCTTTCGGTTCTCACACAGTCCGTCAAAAATAATACACAAGTGTTAATAAATTGTCGTAACAATAAAAAGTTATTGGGTCGTGTAAAAGCCTTTGACCGGCATTGCAACATGGTGTTAGAAAATGTTAAAGAAATGTGGACCGAAGTTCCAAGGACGGGGAAAGGCAAAAAGGGTAAAGCTGTGAACAAAGATAAGTTCATATCAAAGATGTTCCTCCGAGGTGATTCAGTTATCTTAGTCCTCAGGAATCCTCTAGCTACTGCTGCTGGAAAGTAA
>DPOGS206276-PA
MATTSKPRSEMTLEELAKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKGKAVNKDKFISKMFLRGDSVILVLRNPLATAAGK-