Monarch geneset OGS2.0

DPOGS206403
TranscriptDPOGS206403-TA1467 bp
ProteinDPOGS206403-PA488 aa
Genomic positionDPSCF300192 + 318106-337322
RNAseq coverage25x (Rank: top 77%)
Annotation
HeliconiusHMEL0133132e-15864.69% 
BombyxBGIBMGA003715-TA0.066.60% 
DrosophilanAcRalpha-30D-PE0.081.14% 
EBI UniRef50UniRef50_B4Q8830.082.94%GD22333 n=10 Tax=Endopterygota RepID=B4Q883_DROSI
NCBI RefSeqNP_001091830.10.090.48%nicotinic acetylcholine receptor subunit alpha 6 isoform 3 [Bombyx mori]
NCBI nr blastpgi|1482987280.090.48%nicotinic acetylcholine receptor subunit alpha 6 isoform 3 precursor [Bombyx mori]
NCBI nr blastxgi|1482987280.090.48%nicotinic acetylcholine receptor subunit alpha 6 isoform 3 precursor [Bombyx mori]
Group
Gene OntologyGO:00160215.4e-279integral to membrane
GO:00068115.4e-279ion transport
GO:00160203.9e-67membrane
GO:00068103.9e-67transport
GO:00052303.9e-67extracellular ligand-gated ion channel activity
GO:00048891.5e-13nicotinic acetylcholine-activated cation-selective channel activity
GO:00052161.5e-13ion channel activity
GO:00452111.5e-13postsynaptic membrane
KEGG pathwayecb:1000605211e-116 
 K04809 (CHRNA7)maps-> Neuroactive ligand-receptor interaction
    Calcium signaling pathway
InterPro domain[17-487] IPR0062015.4e-279Neurotransmitter-gated ion-channel
[24-192] IPR0062023.9e-67Neurotransmitter-gated ion-channel ligand-binding
[256-488] IPR0060298.9e-51Neurotransmitter-gated ion-channel transmembrane domain
[20-36] IPR0023941.5e-13Nicotinic acetylcholine receptor
Orthology groupMCL10227 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS206403-TA
ATGGAGTTGGGCAACAGGCGTGGGGCGAATGACGAGAAAAATCAAATCCTGACCACAAACGTCTGGCTTAACTTGGACGAGAAGAATCAACTACTTATAACCAATATATGGCTGTCATTGGAATGGAATGACTACAACCTGAGGTGGAACGACAGTGACTACGGTGGAGTTAAGGATCTACGCATCACACCCAACAAACTATGGAAACCAGACGTTCTCATGTACAACAGTGCTGACGAGGGTTTTGATGGGACGTACCAGACGAACGTGGTGGTCAGAAACAACGGCAGTTGTCTGTACGTACCACCCGGCATTTTCAAGAGCACATGCAAGATAGACATCACCTGGTTTCCCTTCGATGACCAACATTGCGACATGAAGTTCGGTAGCTGGACTTACGACGGCAACCAGTTGGATCTGGTTTTAAAGGATGAAGCTGGTGGTGACCTGTCCGATTTTATCACAAACGGCGAGTGGTATTTAATAGGTATGCCGGGAAAGAAAAACACCATAACATACGCGTGTTGTCCAGAACCATATGTAGACGTGACATTTACAATCATGATAAGAAGACGGACACTCTACTATTTCTTCAACCTGATAGTTCCTTGTGTACTTATATCATCAATGGCACTTCTCGGTTTCACACTGCCACCAGACTCCGGAGAAAAATTAACACTCGGAGTCACTATACTTCTATCGCTGACGGTGTTTCTGAACCTGGTTGCCGAGACCCTGCCGCAGGTCTCCGACGCTATCCCCCTGTTAGGTGTTACAATTCTCCTGTCGCAAACTGTTTTCTCCCTATTGGTGGGGCACGTTATCACTAAAACCTCTGAGGCGATCCCCCTAATAGGGACTTACTTCAATTGCATCATGTTTATGGTGGCCTCGTCTGTGGTCTTGACTGTTGTCGTGTTAAACTACCATCACAGAACAGCAGACATACACGAAATGCCGCAATGGATAAAAACAGTGTTCCTACAATGGCTGCCGTGGATTTTACGTATGTCGAGGCCGGGGAAGAAAATAACGAGGAAAACAATAATGATGTCGAACAGAATGAGAGAATTGGAGTTGAAAGAGCGCTCGTCTAAATCATTGCTGGCGAACGTTTTGGATATAGACGACGACTTCCGACATGTCCCGCCTCCACCCAATAGTACTGCGTCTACCGGGAATCTCGGACCAGGAACGGACTTTCGGCGTTCGTTCGTGAGGCCGTCTACGATGGAAGACGTCGGCGGAGGTCTCGGAAGCCACCATCGGGAGCTCCACTTAATATTAAGAGAATTGCAGTTCATCACGGCGAGGATGAAGAAGGCCGATGATGAAGCTGAACTCATCAGCGATTGGAAATTTGCAGCGATGGTTGTAGACAGGTTCTGTCTGTTCGTGTTCACATTATTCACTATCATCGCGACAGTGGCCGTACTCCTGTCCGCTCCCCATATCATCGTTCAGTGA

Protein sequence:

>DPOGS206403-PA
MELGNRRGANDEKNQILTTNVWLNLDEKNQLLITNIWLSLEWNDYNLRWNDSDYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTYQTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQLDLVLKDEAGGDLSDFITNGEWYLIGMPGKKNTITYACCPEPYVDVTFTIMIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGVTILLSQTVFSLLVGHVITKTSEAIPLIGTYFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPQWIKTVFLQWLPWILRMSRPGKKITRKTIMMSNRMRELELKERSSKSLLANVLDIDDDFRHVPPPPNSTASTGNLGPGTDFRRSFVRPSTMEDVGGGLGSHHRELHLILRELQFITARMKKADDEAELISDWKFAAMVVDRFCLFVFTLFTIIATVAVLLSAPHIIVQ-