| DPOGS206662 | ||
|---|---|---|
| Transcript | DPOGS206662-TA | 318 bp |
| Protein | DPOGS206662-PA | 105 aa |
| Genomic position | DPSCF300048 + 318451-318928 | |
| RNAseq coverage | 358x (Rank: top 33%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL011135 | 2e-47 | 80.00% | |
| Bombyx | BGIBMGA008493-TA | 1e-44 | 86.17% | |
| Drosophila | CG31950-PA | 2e-21 | 50.52% | |
| EBI UniRef50 | UniRef50_F4W485 | 7e-26 | 71.25% | LSM domain-containing protein 1-A n=7 Tax=Endopterygota RepID=F4W485_ACREC |
| NCBI RefSeq | XP_001607580.1 | 2e-25 | 69.62% | PREDICTED: similar to small nuclear ribonucleoprotein, core, putative [Nasonia vitripennis] |
| NCBI nr blastp | gi|332031609 | 3e-25 | 71.25% | LSM domain-containing protein 1-A [Acromyrmex echinatior] |
| NCBI nr blastx | gi|332031609 | 5e-23 | 71.25% | LSM domain-containing protein 1-A [Acromyrmex echinatior] |
| Group | ||||
|---|---|---|---|---|
| KEGG pathway | nve:NEMVE_v1g176237 | 5e-10 | ||
| K11086 (SNRPB, SMB) | maps-> | Spliceosome | ||
| Systemic lupus erythematosus | ||||
| InterPro domain | [17-101] IPR010920 | 4.2e-16 | Like-Sm ribonucleoprotein (LSM)-related domain | |
| [22-92] IPR006649 | 7.7e-12 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
| [25-92] IPR001163 | 1.7e-09 | Like-Sm ribonucleoprotein (LSM) domain | ||
| Orthology group | MCL12965 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS206662-TA
ATGTCTTCAACAACTTTAACACCAGTGGGGGACCCCAAGGTTATTGAGGAATTAGAAGGTAAAGCGAAGTTGAGAAAATGGTTAAATATGAATTTTAGGATTGAAATGACTGATGGCAGAGTATTAATAGGGGTGTTTCTTTGCACGGACAGGGATGCGAATGTAATATTAGGAGCCTGTTCAGAATATTTAAAAAGCTCTGATGGTGAAACAGAGGAGCCTCGAGTACTTGGTCTAGTCATGGTGCCAGGACGTCACATTGTATCCATACAACTTGACAATACAAACCCACCACAAAAATATTTCTATGATGAATGA
>DPOGS206662-PA
MSSTTLTPVGDPKVIEELEGKAKLRKWLNMNFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKSSDGETEEPRVLGLVMVPGRHIVSIQLDNTNPPQKYFYDE-