Monarch geneset OGS2.0

DPOGS206779
TranscriptDPOGS206779-TA876 bp
ProteinDPOGS206779-PA291 aa
Genomic positionDPSCF300001 - 5839743-5842803
RNAseq coverage83x (Rank: top 64%)
Annotation
HeliconiusHMEL0061752e-6965.87% 
BombyxBGIBMGA010697-TA2e-13088.37% 
DrosophilaTfb4-PA8e-10360.50% 
EBI UniRef50UniRef50_Q8SZ894e-10060.14%RE13149p n=18 Tax=Endopterygota RepID=Q8SZ89_DROME
NCBI RefSeqXP_001662634.11e-11269.26%transcription factor TFIIH-subunit, putative [Aedes aegypti]
NCBI nr blastpgi|1571327663e-11169.26%transcription factor TFIIH-subunit, putative [Aedes aegypti]
NCBI nr blastxgi|1571327665e-11468.53%transcription factor TFIIH-subunit, putative [Aedes aegypti]
Group
Gene OntologyGO:00062813.3e-128DNA repair
GO:00063553.3e-128regulation of transcription, DNA-dependent
GO:00004393.3e-128core TFIIH complex
KEGG pathwayaag:AaeL_AAEL0125234e-112 
 K03143 (TFIIH3)maps-> Basal transcription factors
    Nucleotide excision repair
InterPro domain[1-291] IPR0046003.3e-128Transcription factor Tfb4
Orthology groupMCL15162 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS206779-TA
ATGGCAGACGACGAAGCGCCCTCAGATAGCAGTCTCCTAGTAATAATTGTTGATACGAACCCCAACCAGCGGTATATCACCGAAGATCCAAAAGTTTTGACCGGTTGTTTAGACGCGGTTATCGCATTCGCGAACTCCCACCTTATGCAAAAATCCAGGAATCAACTAGCGGTTATTGGGTGTCACTTTCATAAAAGTGAATATCTGTATCCATCACCTGGGAAACCCTTAGATGTGAGACAAATTGATGGGCAATATGAATTGTTCACACTCGTAGAAAAGACTATTAAAATGAGATTAGTGAATTTAATAAAGAGTCAACCTCAAGAAGAACGGCCGGGTGAATCGCTGCTGGCTGGAGCCATGGCTATGGGGTTATGTTTTATTGCTAGAATGCGTCGTGAACAGCCGCCGGGATTGCGTATGGTGAGCAGAATGTTGGTAGTGACGGGGAGCTCGGACACAGCCGCGCAGTACATTAACTATATGAATGTATTTTTTACTGCACAGAAACAACAAGTGTTGTTGGACGTGTGTTCGTTGGACAAACATCTGAGCTTATTACAGCAGGGTTGCGACATCACAGGAGGCTTATATTTAAAAGTACCCTCGCTTGAAGGACTCTTGCAATATCTATTGTGGGTTTTTCTGCCTGAGGCCAGTGAAAGACGGGAACTGGTACTGCCCGGCCGAGGCAGAGTTGATTACAGAGCGGCCTGCTTCTGTCACAGGGAATTATTGACTATAGGATATGTGTGCTCTGTGTGTTTGAGCGTGTTTTGCAAGTTCAGCCCAATATGTACCACTTGCCATACCGTGTTTAAGATCGGCGGTCCTCTCCCTATGAAGCCGAAGAAAAAGAAAATAAAGATTTAG

Protein sequence:

>DPOGS206779-PA
MADDEAPSDSSLLVIIVDTNPNQRYITEDPKVLTGCLDAVIAFANSHLMQKSRNQLAVIGCHFHKSEYLYPSPGKPLDVRQIDGQYELFTLVEKTIKMRLVNLIKSQPQEERPGESLLAGAMAMGLCFIARMRREQPPGLRMVSRMLVVTGSSDTAAQYINYMNVFFTAQKQQVLLDVCSLDKHLSLLQQGCDITGGLYLKVPSLEGLLQYLLWVFLPEASERRELVLPGRGRVDYRAACFCHRELLTIGYVCSVCLSVFCKFSPICTTCHTVFKIGGPLPMKPKKKKIKI-