| DPOGS206813 | ||
|---|---|---|
| Transcript | DPOGS206813-TA | 393 bp |
| Protein | DPOGS206813-PA | 130 aa |
| Genomic position | DPSCF300001 - 3821687-3822528 | |
| RNAseq coverage | 2660x (Rank: top 5%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL017608 | 2e-55 | 97.69% | |
| Bombyx | BGIBMGA013100-TA | 5e-72 | 99.23% | |
| Drosophila | SmD3-PA | 6e-49 | 85.98% | |
| EBI UniRef50 | UniRef50_O44437 | 8e-47 | 85.98% | Small nuclear ribonucleoprotein Sm D3 n=35 Tax=Bilateria RepID=SMD3_DROME |
| NCBI RefSeq | XP_972583.1 | 6e-53 | 84.00% | PREDICTED: similar to AGAP012380-PA [Tribolium castaneum] |
| NCBI nr blastp | gi|91084331 | 2e-51 | 84.00% | PREDICTED: similar to AGAP012380-PA [Tribolium castaneum] |
| NCBI nr blastx | gi|58393584 | 7e-53 | 84.62% | AGAP012380-PA [Anopheles gambiae str. PEST] |
| Group | ||||
|---|---|---|---|---|
| KEGG pathway | tca:661326 | 2e-52 | ||
| K11088 (SNRPD3, SMD3) | maps-> | Spliceosome | ||
| Systemic lupus erythematosus | ||||
| InterPro domain | [6-129] IPR010920 | 1.5e-24 | Like-Sm ribonucleoprotein (LSM)-related domain | |
| [8-73] IPR006649 | 2.5e-14 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
| [9-73] IPR001163 | 1e-11 | Like-Sm ribonucleoprotein (LSM) domain | ||
| Orthology group | MCL12566 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS206813-TA
ATGTCTATTGGTGTTCCTATTAAAGTACTTCACGAAGCGGAAGGCCATGTAGTGACTTGCGAAACAAATACCGGCGAAGTTTACAGAGGGAAGCTAATAGAAGCTGAAGATAATATGAATTGTCAAATGACTTTGGTAACGGTTACATACAGAGATGGGCGAGTGGCACAGCTAGAAAATGTATATATAAGAGGTTCTAAGATACGTTTTCTTATATTACCGGATATGTTAAAAAACGCGCCGATGTTTAAACGACAAGGAAACAAACCAACCGCTGGTCGCGGTAAAAGTGCTATACTACGAGCTCAAGCAGCGGGTAGAGGTCGTGCTAGTGGTCGAGGTGGAGGACATCGTGGAGGATGGCAGGGTGGCTCTGGACCATCGAGGCGGTAG
>DPOGS206813-PA
MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSAILRAQAAGRGRASGRGGGHRGGWQGGSGPSRR-