DPOGS206884 | ||
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Transcript | DPOGS206884-TA | 591 bp |
Protein | DPOGS206884-PA | 196 aa |
Genomic position | DPSCF300001 - 2041133-2041723 | |
RNAseq coverage | 39x (Rank: top 73%) |
Annotation | ||||
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Heliconius | HMEL006878 | 5e-80 | 77.27% |   |
Bombyx | BGIBMGA012841-TA | 2e-81 | 72.34% |   |
Drosophila | % |   | ||
EBI UniRef50 | UniRef50_UPI000203A21D | 1e-22 | 38.89% | UPI000203A21D related cluster n=1 Tax=unknown RepID=UPI000203A21D |
NCBI RefSeq | XP_002738372.1 | 2e-22 | 37.32% | PREDICTED: methyl-CpG binding domain protein 4-like [Saccoglossus kowalevskii] |
NCBI nr blastp | gi|327280386 | 5e-22 | 38.89% | PREDICTED: methyl-CpG-binding domain protein 4-like [Anolis carolinensis] |
NCBI nr blastx | gi|328712829 | 4e-22 | 43.85% | PREDICTED: methyl-CpG-binding domain protein 4-like [Acyrthosiphon pisum] |
Group | ||||
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Gene Ontology | GO:0006281 | 1.2e-19 | DNA repair | |
GO:0003824 | 1.2e-19 | catalytic activity | ||
KEGG pathway | xtr:733528 | 3e-20 |   | |
  | K10801 (MBD4) | maps-> | Base excision repair | |
InterPro domain | [22-171] IPR011257 | 1.2e-19 | DNA glycosylase | |
Orthology group | MCL19609 |   | Patchy |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS206884-TA
ATGAATTTGGAGAACGACTTGAGTTTATCACAATTAACAATAGAAGAGCCGGACCCATTAAACATACCGCCTTTCTTCAATCTCACACCTCGCTTAATGCCCGAATCACCTCACTATATAATAGAGGAGGAATTCTCTCTCAACCCCTGGGCAATGTTAGTAGCAACTATATTCCTAACAAAGACGTCCGGCAAAACAGCTAGGCCGTATATAAAGAGTTTTTTTACGGACTACCCGACACCTTATCAAGTTTTGGATGAAACTCCATCGTCATTAGAGAGGTTCTTCGAGAACTTAGGATTAAAAAAACGTGGTAATATGATTTGGAAGCTGAGTTACCAGTTCGTGTCTGGTAAATGGCGGCGAGCTAGCGATCTCTGTGGAATCGGGAAGTATGGGGAGGACGCTTATAGGATCTTTTGCTTAGGTCACACGGATGTAAACCCTGACGATAGATATTTAAAGCTCTATTTAGATTGGCTGCAGTGTCACACTGAGTTCATAAAAGACAGGAGCGTAACTGACAGCGAAAACCTATTACAAGATCCGGTTCTGAAATATTATAGAATTACTTTGAAAAGTAATGTATAA
>DPOGS206884-PA
MNLENDLSLSQLTIEEPDPLNIPPFFNLTPRLMPESPHYIIEEEFSLNPWAMLVATIFLTKTSGKTARPYIKSFFTDYPTPYQVLDETPSSLERFFENLGLKKRGNMIWKLSYQFVSGKWRRASDLCGIGKYGEDAYRIFCLGHTDVNPDDRYLKLYLDWLQCHTEFIKDRSVTDSENLLQDPVLKYYRITLKSNV-