Monarch geneset OGS2.0

DPOGS207184
TranscriptDPOGS207184-TA1425 bp
ProteinDPOGS207184-PA474 aa
Genomic positionDPSCF300001 + 5160122-5165907
RNAseq coverage22x (Rank: top 78%)
Annotation
HeliconiusHMEL0034970.076.26% 
BombyxBGIBMGA013690-TA0.070.41% 
DrosophilaRdl-PC4e-17591.52% 
EBI UniRef50UniRef50_P251236e-17391.52%Gamma-aminobutyric acid receptor subunit beta n=77 Tax=Bilateria RepID=GBRB_DROME
NCBI RefSeqNP_001182629.10.088.35%ionotropic GABA-aminobutyric acid receptor RDL2 [Bombyx mori]
NCBI nr blastpgi|3553440780.090.32%gamma-aminobutyric receptor alpha 2 subunit [Spodoptera litura]
NCBI nr blastxgi|3553440780.091.39%gamma-aminobutyric receptor alpha 2 subunit [Spodoptera litura]
Group
Gene OntologyGO:00160211.1e-240integral to membrane
GO:00068111.1e-240ion transport
GO:00160204.3e-61membrane
GO:00068104.3e-61transport
GO:00052304.3e-61extracellular ligand-gated ion channel activity
GO:00052165.3e-16ion channel activity
GO:00048905.3e-16GABA-A receptor activity
KEGG pathway 
InterPro domain[6-473] IPR0062011.1e-240Neurotransmitter-gated ion-channel
[8-213] IPR0062024.3e-61Neurotransmitter-gated ion-channel ligand-binding
[222-453] IPR0060296.6e-56Neurotransmitter-gated ion-channel transmembrane domain
[218-238] IPR0060289.4e-43Gamma-aminobutyric acid A receptor
[66-80] IPR0022895.3e-16Gamma-aminobutyric-acid A receptor, beta subunit
Orthology groupMCL14544 Insect specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS207184-TA
ATGTTTGGTGATGTCAACATTTCAGCAATTTTGGATTCTCTAAGCGTAAGCTATGACAAGAGAGTACGACCAAACTATGGAGGACCGCCTGTGGATGTGGGAGTCACGATGTACGTGCTGTCAATCAGCTCCTTATCTGAAGTTAAAATGGATTTTACCTTGGATTTCTACTTTAGACAATTTTGGACAGATCCAAGACTTGCTTATAAAAAGCGGCCTGGTGTCGAGACTCTATCGGTTGGATCTGAATTTATTCGAAATATATGGGTACCTGATACGTTCTTTGTAAATGAAAAGCAATCGTACTTTCACATAGCCACCACTAGCAATGAATTTATTCGTATTCATCACTCTGGATCTATCACACGGAGCATAAGGTTGACAATAACGGCTTCTTGTCCTATGGATTTGCAATACTTCCCTATGGATCGGCAGCTCTGTAATATTGAGATTGAAAGCTTCGGCTACACGATGCGGGACATCCGATATAAGTGGAATGAAGGCCCCAATTCTGTTGGTGTGTCGAGCGAAGTGTCGCTACCGCAGTTCAAGGTGCTTGGCCATCGTCAACGAGCTATGGAAATATCACTTACAACAGGAAATTATTCGCGTTTGGCTTGTGAAATTCAGTTTGTGCGTTCGATGGGTTACTACTTAATCCAAATTTATATTCCCTCTGGATTGATTGTTATCATATCATGGGTGTCTTTTTGGCTGAACCGGAATGCAACTCCAGCTAGAGTATCTCTTGGTGTCACTACTGTGTTGACTATGACTACTCTTATGTCTTCAACGAATGCTGCGCTACCAAAAATCTCATACGTCAAATCTATAGATGTATATTTGGGCACCTGTTTCGTGATGGTCTTCGCCAGTTTACTAGAGTATGCAACCGTCGGCTACATGGCGAAAAGAATTCAAATGAGGAAACAACGATTTACTGCTGTTCAAAAGATGGCTGCTGAGAAAAAAATGCAGATTGATGGGGCTCCTGGACCTTCCGAAATACCTCGACAAGAGCCTCTGCCACCACCAAGGACGAGCACTCTAGGCAGACCCGCTCCACCAAGCCGTTCTTCGGAAGTGCGATTCAAGATTCATGACGGAAAATACTCTAGGAGTAGCACTTTGGATAGTGCTCTCAATGGCGGTCGAGGGGGACCGTCATCAGCTCCAATTCCTGTCCCCGTTCCGGTTCCGGTTGCAGTACCAGGTCCTGAGGAAGAAGCAGTGGCTCCACATCTGATTCAGGCATCAAAGAGCATCAATAAACTACTCGGCGCTACTCCATCGGACATCGACAAGTATTCACGCATTGTTTTCCCCGTTTGCTTCGTCTGCTTTAACTTGATGTACTGGATTATCTACCTTCATGTATCTGATGTGGTTGCTGATGATCTTGTATTACTTGGAGAAGAAAACTAA

Protein sequence:

>DPOGS207184-PA
MFGDVNISAILDSLSVSYDKRVRPNYGGPPVDVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYKKRPGVETLSVGSEFIRNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMDLQYFPMDRQLCNIEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVSLGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFTAVQKMAAEKKMQIDGAPGPSEIPRQEPLPPPRTSTLGRPAPPSRSSEVRFKIHDGKYSRSSTLDSALNGGRGGPSSAPIPVPVPVPVAVPGPEEEAVAPHLIQASKSINKLLGATPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLLGEEN-