Monarch geneset OGS2.0

DPOGS208233
TranscriptDPOGS208233-TA1752 bp
ProteinDPOGS208233-PA583 aa
Genomic positionDPSCF300079 - 370074-374220
RNAseq coverage515x (Rank: top 24%)
Annotation
HeliconiusHMEL0103890.070.94% 
BombyxBGIBMGA006424-TA0.081.65% 
DrosophilaCG5706-PA0.068.93% 
EBI UniRef50UniRef50_Q9NSD90.060.10%Phenylalanine--tRNA ligase beta subunit n=66 Tax=Eukaryota RepID=SYFB_HUMAN
NCBI RefSeqNP_001182135.10.081.65%phenylalanyl-tRNA synthetase beta subunit [Bombyx mori]
NCBI nr blastpgi|3045719470.081.65%phenylalanyl-tRNA synthetase beta subunit [Bombyx mori]
NCBI nr blastxgi|3045719470.081.65%phenylalanyl-tRNA synthetase beta subunit [Bombyx mori]
Group
Gene OntologyGO:00064325.7e-149phenylalanyl-tRNA aminoacylation
GO:00048265.7e-149phenylalanine-tRNA ligase activity
GO:00055245.7e-149ATP binding
GO:00001665.7e-149nucleotide binding
GO:00057375.7e-149cytoplasm
GO:00037233e-26RNA binding
GO:00002871.7e-16magnesium ion binding
KEGG pathwaydme:Dmel_CG57060.0 
 K01890 (FARSB, pheT)maps-> Aminoacyl-tRNA biosynthesis
InterPro domain[1-583] IPR0045315.7e-149Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic
[116-278] IPR0051463e-26B3/B4 tRNA-binding domain
[302-376] IPR0090616.9e-18DNA binding domain, putative
[303-371] IPR0051471.7e-16tRNA synthetase, B5-domain
[98-292] IPR0208251.5e-07Phenylalanyl-tRNA synthetase, B3/B4
Orthology groupMCL13354 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS208233-TA
ATGCCGACAATATCTGTAAAACGTGATGTACTTTTCGCAGCCTTGGGAAAATCTTACACTGATGAGGAATTCCAAGATGTGTGTTTTGAATTTGGCCTGGAATTAGACGAAGTGACCACAGAGAAACAGATGTTGATAAAGGAGCAGGGTGATCAAGCGGGTGCTGGGGTTTCAGAGGAGGTATTATATCGAATTGATATTCCAGCTAATAGATATGATTTGCTGTGCCTTGAGGGACTTGTTAATGGTATACTTGTATTTCAGGGCAAGAAATCCCCACCAATATTTAAGTTAAAAAAGTATGAAGATTGCTACTCCCTCCATTTAACACCAGCTACAGCTCAAATCAGGCCATATGCTGTAGCAGCTGTACTTAAAGGAATATCTTTCACAAAGACAAGCTATGACAGCTTCATAGAATTACAGGATAAATTACATCAAAACATCTGTAGAAAACGAACACTAGTGGCCATCGGCACACATGATCTGGATACTATTCAGGGACCATTTGTGTATGATGCACTGCCACCGAATGATATTAAATTCAAAGCTCTCAATCAAACAAAGGAGATGACTGCTCCCGAATTAATGGAATTATACTCTACTCATGCTCAACTTAAACAATATCTTAATATTATAAGAGACAGTCCCGTGTATCCTGTTATTAAGGATAAAAATGGTGTTGTGCTGTCGATGCCTCCTATCATCAATGGAGATCACTCCAAGATCACACTCAACACTAAGAACGTTTTCATTGAGTGTACTGCCACTGATCTCACAAAGGCGATAGTAGTATTGGATACTATTGTGTGTATGTTCTCTGAGTACTGTTCTAATAAATATGAAATACAACAATGCAAAGTATTCTCACCCGATGGGACTTATGAGTTATATCCCCAGCTGGAATATAGGGACGAAGTTATAAGTGTTGAGAAAGCTAACAAATATATAGGGATTAGCGAGTCCAGCGAAGTTCTATCTTCTCTCCTCTCCCGCATGTGTCTCTCGTCTCGTCCGTGCGGCGACCGGCTGACGGTCCGCGTACCCCCCACCAGGCATGACGTCATACACGCCTGCGACCTCTACGAAGACATCGCCATCGCTTATGGCTATAACAACATCCCTCGTCGTCCGTCCCGCGTCGTGTCCTGCGGAGCTCAAGAGCCGCTCAGTAAACTTACAGAGCAACTGCGCCACGCGTGCGCTTGTGCCGGGTACACTGAAGCTCTCACCTTCACACTCTGTTCTCGTGAAGATGTATCAACAAAACTTGGTTACAAAATAGAAGATATTCCAGCGGTTCATATTTCAAATCCCAAAACATTGGAGTTCCAAGTAGTGAGGACGTTGTTGTTACCTGGACTGCTTAAAACCCTCGCTGCCAATAAGAAGATGCCCTTACCGTTGAAGCTGTTTGAGATTAGTGACGTCGTCATCAAAGATGAGAAGGAGGAGACGGGCGCCCGTAATGAACGTCGCCTATGCGGCGTGTACTGCGGCAAGGCTGGTGGCTTTCAGTTCGTTCACGGATTCCTTGACAGGTTGCTGTCTTCACTGAGGGTGGCGCATAAAGAAGATTACTATCTAAAGCCCTGTCAAGACCCGACGTATTTCCCCGGACGTTGTGCTGAGGTCGTACTGAAAGGTCAAGTCATCGGCAAAATAGGTGTCATCCATCCTAATGTATTGTCAGCATTCGAACTTACCAACCCATGCTCCGCTGTGGAAATTAACATTGAACCTTTCTTGTGA

Protein sequence:

>DPOGS208233-PA
MPTISVKRDVLFAALGKSYTDEEFQDVCFEFGLELDEVTTEKQMLIKEQGDQAGAGVSEEVLYRIDIPANRYDLLCLEGLVNGILVFQGKKSPPIFKLKKYEDCYSLHLTPATAQIRPYAVAAVLKGISFTKTSYDSFIELQDKLHQNICRKRTLVAIGTHDLDTIQGPFVYDALPPNDIKFKALNQTKEMTAPELMELYSTHAQLKQYLNIIRDSPVYPVIKDKNGVVLSMPPIINGDHSKITLNTKNVFIECTATDLTKAIVVLDTIVCMFSEYCSNKYEIQQCKVFSPDGTYELYPQLEYRDEVISVEKANKYIGISESSEVLSSLLSRMCLSSRPCGDRLTVRVPPTRHDVIHACDLYEDIAIAYGYNNIPRRPSRVVSCGAQEPLSKLTEQLRHACACAGYTEALTFTLCSREDVSTKLGYKIEDIPAVHISNPKTLEFQVVRTLLLPGLLKTLAANKKMPLPLKLFEISDVVIKDEKEETGARNERRLCGVYCGKAGGFQFVHGFLDRLLSSLRVAHKEDYYLKPCQDPTYFPGRCAEVVLKGQVIGKIGVIHPNVLSAFELTNPCSAVEINIEPFL-