| DPOGS208370 | ||
|---|---|---|
| Transcript | DPOGS208370-TA | 633 bp |
| Protein | DPOGS208370-PA | 210 aa |
| Genomic position | DPSCF300146 - 10738-14067 | |
| RNAseq coverage | 110x (Rank: top 59%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL007231 | 4e-53 | 75.00% | |
| Bombyx | BGIBMGA011593-TA | 1e-28 | 35.56% | |
| Drosophila | SdhC-PA | 2e-18 | 38.10% | |
| EBI UniRef50 | UniRef50_F4WXF2 | 2e-21 | 41.44% | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial n=10 Tax=Apocrita RepID=F4WXF2_ACREC |
| NCBI RefSeq | XP_972464.1 | 8e-26 | 43.55% | PREDICTED: similar to succinate dehydrogenase [Tribolium castaneum] |
| NCBI nr blastp | gi|91077184 | 1e-24 | 43.55% | PREDICTED: similar to succinate dehydrogenase [Tribolium castaneum] |
| NCBI nr blastx | gi|91077184 | 2e-24 | 43.55% | PREDICTED: similar to succinate dehydrogenase [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006099 | 7.9e-23 | tricarboxylic acid cycle | |
| GO:0000104 | 7.9e-23 | succinate dehydrogenase activity | ||
| GO:0045282 | 7.9e-23 | plasma membrane succinate dehydrogenase complex | ||
| GO:0016627 | 5.6e-21 | oxidoreductase activity, acting on the CH-CH group of donors | ||
| KEGG pathway | ame:409549 | 6e-23 | ||
| K00236 (SDHC, SDH3) | maps-> | Huntington's disease | ||
| Citrate cycle (TCA cycle) | ||||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Parkinson's disease | ||||
| InterPro domain | [90-209] IPR014314 | 7.9e-23 | Succinate dehydrogenase, cytochrome b556 subunit | |
| [87-206] IPR000701 | 5.6e-21 | Succinate dehydrogenase/Fumarate reductase, transmembrane subunit | ||
| Orthology group | MCL34749 | Lepidoptera specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS208370-TA
ATGTTGAATATAGTAATTAAATATCATTGCTGCAAAGAAACATCGAGTTTTATGAGATTATTGAATAAAAACAGGTCGATTTTCGGGCCACAGTCATCGATTGTGGGTTGCAATTTTCTGAGATATAAAGGAGTTTGTCCTCCCGCAAGTTCAGGGCCTGGTGCAGCCAAAGGCTCAGGTCCTGGAAAGGGCGCCAAACATAAGATAACATATCAACCTTACACCGCGCCGCCACCAACGTGCCATGATTTTAAAAATATGAGTTTAAACCGCCCTATGTCTCCACATCTAACGATTTTCGCTCCCACCCTACCCGCTATGACATCCATTGTTCAGCGTATTACAGGCATGATAATAACGTTTTACGCTCTCCTCCTATCCTCTGGAAGTTTGTTCCTGTCGAACGGCGTAGAAACATACGTGTCTATTATCCAGAGCTTTGATTTTTCCTTACCTATGGTATTTATTATTAAGATGATGTTAGGTGCGCCGTTTGTCTATCATTATTTCAACGGTATCCGTTTCGTTATGTGGAATGCTGGTAAGTGGTTGTCCATCAAAGAAGTTTACGATTCAGCTAAGAAGAGTTTTGTTGCGACAGCCGTATTAACATTGCTTTTCTCCATAATTTAA
>DPOGS208370-PA
MLNIVIKYHCCKETSSFMRLLNKNRSIFGPQSSIVGCNFLRYKGVCPPASSGPGAAKGSGPGKGAKHKITYQPYTAPPPTCHDFKNMSLNRPMSPHLTIFAPTLPAMTSIVQRITGMIITFYALLLSSGSLFLSNGVETYVSIIQSFDFSLPMVFIIKMMLGAPFVYHYFNGIRFVMWNAGKWLSIKEVYDSAKKSFVATAVLTLLFSII-