| DPOGS208620 | ||
|---|---|---|
| Transcript | DPOGS208620-TA | 708 bp |
| Protein | DPOGS208620-PA | 235 aa |
| Genomic position | DPSCF300052 + 654234-657324 | |
| RNAseq coverage | 37x (Rank: top 73%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL016583 | 9e-125 | 96.17% | |
| Bombyx | BGIBMGA005723-TA | 3e-122 | 94.78% | |
| Drosophila | HisCl1-PA | 6e-102 | 82.13% | |
| EBI UniRef50 | UniRef50_Q9VGI0 | 8e-100 | 82.13% | Histamine-gated chloride channel subunit 1 n=28 Tax=Coelomata RepID=Q9VGI0_DROME |
| NCBI RefSeq | XP_624072.1 | 1e-108 | 80.51% | PREDICTED: similar to Histamine-gated chloride channel subunit 1 CG14723-PA, isoform A [Apis mellifera] |
| NCBI nr blastp | gi|380027122 | 1e-107 | 80.51% | PREDICTED: glycine receptor subunit alpha-4-like [Apis florea] |
| NCBI nr blastx | gi|328720498 | 3e-109 | 81.86% | PREDICTED: glycine receptor subunit alpha-4-like [Acyrthosiphon pisum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0016021 | 6.6e-133 | integral to membrane | |
| GO:0006811 | 6.6e-133 | ion transport | ||
| GO:0016020 | 1.7e-38 | membrane | ||
| GO:0006810 | 1.6e-07 | transport | ||
| GO:0005230 | 1.6e-07 | extracellular ligand-gated ion channel activity | ||
| KEGG pathway | dre:192124 | 4e-41 | ||
| K05195 (GLRA3) | maps-> | Neuroactive ligand-receptor interaction | ||
| InterPro domain | [1-231] IPR006201 | 6.6e-133 | Neurotransmitter-gated ion-channel | |
| [66-235] IPR006029 | 1.7e-38 | Neurotransmitter-gated ion-channel transmembrane domain | ||
| [69-89] IPR006028 | 9.3e-35 | Gamma-aminobutyric acid A receptor | ||
| [1-66] IPR006202 | 1.6e-07 | Neurotransmitter-gated ion-channel ligand-binding | ||
| Orthology group | MCL26686 | Insect specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS208620-TA
ATGCTGTTAGTTTTCTTATCACATACAGTGCACGACTTAGTATTCATCTGGAACCTAACAGATCCTTTGGTTGTAAATCCAGACATCGAGCTCCCTCAACTAGATATAGCTAACAACTTTACCTCCGACTGCACTATCGAGTACTCCACAGGTAACTTCACATGCCTAGCGGTAGTTTTCAACTTACGCCGACGTCTTGGCTACCACCTGTTCCACACATACATACCATCCGCGCTCATTGTAGTGATGTCCTGGATATCTTTCTGGATTAAGCCGGAAGCTATCCCTGCGAGGGTTACCCTCGGAGTAACCTCTCTTTTGACCTTGGCAACCCAAAATACTCAGTCCCAACAAAGTTTACCACCAGTCTCCTATGTCAAAGCTATAGATGTCTGGATGTCTTCATGTTCCGTCTTCGTTTTCCTGTCCCTATTCGAGTTCGCTGTGGTCAATAACTACATGGGCCCTGTAGCTACAAAGGCCATGAAAGGATACTCTGATGAAGATTTGAGTAGAGATTTAGATGCTTACAAGCACATATTTCCAAACTCGGTGGACCCTCGAGCGAGTACGTCTGCCTCGCTCCCACAATACGAAACCTTCTGTAACGGGAGAGAGACAGCATTATACATAGACCGTTTCTCCCGTTTCTTCTTCCCATTCTCATTCTTCATACTAAACGTCGTATATTGGTCCACGTTTCTATAA
>DPOGS208620-PA
MLLVFLSHTVHDLVFIWNLTDPLVVNPDIELPQLDIANNFTSDCTIEYSTGNFTCLAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLFEFAVVNNYMGPVATKAMKGYSDEDLSRDLDAYKHIFPNSVDPRASTSASLPQYETFCNGRETALYIDRFSRFFFPFSFFILNVVYWSTFL-