DPOGS208794 | ||
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Transcript | DPOGS208794-TA | 471 bp |
Protein | DPOGS208794-PA | 156 aa |
Genomic position | DPSCF300036 - 437070-438462 | |
RNAseq coverage | 888x (Rank: top 14%) |
Annotation | ||||
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Heliconius | HMEL004917 | 1e-49 | 98.90% |   |
Bombyx | BGIBMGA007656-TA | 5e-55 | 70.00% |   |
Drosophila | Rbp1-like-PB | 3e-38 | 85.19% |   |
EBI UniRef50 | UniRef50_B9VSZ6 | 1e-69 | 83.12% | Rbp1-like RNA-binding protein PB n=4 Tax=Obtectomera RepID=B9VSZ6_BOMMO |
NCBI RefSeq | NP_001037604.1 | 5e-49 | 91.75% | RNA-binding protein 1 [Bombyx mori] |
NCBI nr blastp | gi|222137596 | 5e-69 | 83.12% | rbp1-like RNA-binding protein PB [Bombyx mori] |
NCBI nr blastx | gi|222137596 | 2e-68 | 83.12% | rbp1-like RNA-binding protein PB [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0000166 | 3.1e-21 | nucleotide binding | |
GO:0003676 | 1.2e-20 | nucleic acid binding | ||
KEGG pathway | ptr:459167 | 9e-30 |   | |
  | K12896 (SFRS7) | maps-> | Spliceosome | |
InterPro domain | [10-91] IPR012677 | 3.1e-21 | Nucleotide-binding, alpha-beta plait | |
[12-80] IPR000504 | 1.2e-20 | RNA recognition motif domain | ||
Orthology group | MCL16488 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS208794-TA
ATGTCTCGGTACCGTGAATGGGATCTATCTTGCAAAGTGTACGTAGGAAATCTTGGCACAAACGCATCTAAATACGAAATTGAGAAAGTCTTTTCAAAATATGGCAGTATTAGAAATGTGTGGGTGGCGAGAAATCCGCCCGGTTTTGCGTTTGTTGAATATGAAGATCCAAGAGACGCCGAAGATTCCGTACGCGGTTTAGATGGCACACGTTGTTGCGGCACAAGAATTCGTGTTGAGATGAGCAACGGGAGGACACGACGAGATCGCAGGTCCATTTTATCAACCAACCACCAACACACCAACGACCTCACCACATCTCTACACCACAACTACGGCTTCTTTACCAATAAGACATCCGCGAACGTCGCTCGCAACACCCCGCTCTGCGATCGGCTCTCCAAATTACTACGCGCAGCTGAAGCCTTCGTCAACTGCGTCCCTCCCCTCCTCTTAACTGCCATCACCTAG
>DPOGS208794-PA
MSRYREWDLSCKVYVGNLGTNASKYEIEKVFSKYGSIRNVWVARNPPGFAFVEYEDPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRRSILSTNHQHTNDLTTSLHHNYGFFTNKTSANVARNTPLCDRLSKLLRAAEAFVNCVPPLLLTAIT-