| DPOGS208794 | ||
|---|---|---|
| Transcript | DPOGS208794-TA | 471 bp |
| Protein | DPOGS208794-PA | 156 aa |
| Genomic position | DPSCF300036 - 437070-438462 | |
| RNAseq coverage | 888x (Rank: top 14%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL004917 | 1e-49 | 98.90% | |
| Bombyx | BGIBMGA007656-TA | 5e-55 | 70.00% | |
| Drosophila | Rbp1-like-PB | 3e-38 | 85.19% | |
| EBI UniRef50 | UniRef50_B9VSZ6 | 1e-69 | 83.12% | Rbp1-like RNA-binding protein PB n=4 Tax=Obtectomera RepID=B9VSZ6_BOMMO |
| NCBI RefSeq | NP_001037604.1 | 5e-49 | 91.75% | RNA-binding protein 1 [Bombyx mori] |
| NCBI nr blastp | gi|222137596 | 5e-69 | 83.12% | rbp1-like RNA-binding protein PB [Bombyx mori] |
| NCBI nr blastx | gi|222137596 | 2e-68 | 83.12% | rbp1-like RNA-binding protein PB [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0000166 | 3.1e-21 | nucleotide binding | |
| GO:0003676 | 1.2e-20 | nucleic acid binding | ||
| KEGG pathway | ptr:459167 | 9e-30 | ||
| K12896 (SFRS7) | maps-> | Spliceosome | ||
| InterPro domain | [10-91] IPR012677 | 3.1e-21 | Nucleotide-binding, alpha-beta plait | |
| [12-80] IPR000504 | 1.2e-20 | RNA recognition motif domain | ||
| Orthology group | MCL16488 | Insect specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS208794-TA
ATGTCTCGGTACCGTGAATGGGATCTATCTTGCAAAGTGTACGTAGGAAATCTTGGCACAAACGCATCTAAATACGAAATTGAGAAAGTCTTTTCAAAATATGGCAGTATTAGAAATGTGTGGGTGGCGAGAAATCCGCCCGGTTTTGCGTTTGTTGAATATGAAGATCCAAGAGACGCCGAAGATTCCGTACGCGGTTTAGATGGCACACGTTGTTGCGGCACAAGAATTCGTGTTGAGATGAGCAACGGGAGGACACGACGAGATCGCAGGTCCATTTTATCAACCAACCACCAACACACCAACGACCTCACCACATCTCTACACCACAACTACGGCTTCTTTACCAATAAGACATCCGCGAACGTCGCTCGCAACACCCCGCTCTGCGATCGGCTCTCCAAATTACTACGCGCAGCTGAAGCCTTCGTCAACTGCGTCCCTCCCCTCCTCTTAACTGCCATCACCTAG
>DPOGS208794-PA
MSRYREWDLSCKVYVGNLGTNASKYEIEKVFSKYGSIRNVWVARNPPGFAFVEYEDPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRRSILSTNHQHTNDLTTSLHHNYGFFTNKTSANVARNTPLCDRLSKLLRAAEAFVNCVPPLLLTAIT-