| DPOGS208854 | ||
|---|---|---|
| Transcript | DPOGS208854-TA | 525 bp |
| Protein | DPOGS208854-PA | 174 aa |
| Genomic position | DPSCF300009 - 2063947-2064471 | |
| RNAseq coverage | 4x (Rank: top 89%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL016790 | 1e-41 | 54.19% | |
| Bombyx | BGIBMGA012574-TA | 5e-32 | 48.62% | |
| Drosophila | CG30491-PA | 6e-28 | 42.29% | |
| EBI UniRef50 | UniRef50_G6D279 | 4e-35 | 50.87% | Putative RDH13 n=2 Tax=Eumetazoa RepID=G6D279_DANPL |
| NCBI RefSeq | XP_798545.2 | 2e-33 | 43.75% | PREDICTED: similar to RDH13 [Strongylocentrotus purpuratus] |
| NCBI nr blastp | gi|115657977 | 2e-32 | 43.75% | PREDICTED: similar to RDH13 [Strongylocentrotus purpuratus] |
| NCBI nr blastx | gi|168823516 | 3e-34 | 47.59% | uncharacterized protein LOC100141353 [Danio rerio] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005488 | 5e-29 | binding | |
| KEGG pathway | gga:423274 | 3e-27 | ||
| K11153 (RDH12) | maps-> | Retinol metabolism | ||
| InterPro domain | [1-170] IPR016040 | 5e-29 | NAD(P)-binding domain | |
| Orthology group | ||||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS208854-TA
ATGCAAGTTAATTACTTCAGTTCATTTCTTTTAACATCGCTTCTACTCCCTTTATTAAAAGCATCAGCACCGAGTCGAATAATTAACGTTTCATCAATTGTGCACTTTTATGGGAGAACAGACTTAAATAATTTAAACACGGAATACAGTGGTATTTTTAATTCACACATAGTTTACGCTACTGCAAAGCTCTGTTTGCTACAAATGACTATGGAATTAAATCGCAGATACAAGTTCACGGGCTTAACAGCGTACGCTCTTCATCCTGGAGTTGTAAACACGGAAATGGTTCAACACTTAAATTCGTGGTTCATTAGAAATGTTTTAAAAATTTTTCAAACATTCCATAAAACACCATGGGAAGGAGCACAAACTACGATATATTTAGCTGTATCGCCTGAAATCAATAAGAGTGGATTTTTTTTCAAAGATTGCCGCGAAGCGAGATCTAGTAGAGCTGTACAAGATTTGGAGAGTGCCACTAAACTATGGGAGCTTTCAGAAAGGTATGTAAATTTGAAATGA
>DPOGS208854-PA
MQVNYFSSFLLTSLLLPLLKASAPSRIINVSSIVHFYGRTDLNNLNTEYSGIFNSHIVYATAKLCLLQMTMELNRRYKFTGLTAYALHPGVVNTEMVQHLNSWFIRNVLKIFQTFHKTPWEGAQTTIYLAVSPEINKSGFFFKDCREARSSRAVQDLESATKLWELSERYVNLK-