DPOGS208858 | ||
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Transcript | DPOGS208858-TA | 504 bp |
Protein | DPOGS208858-PA | 167 aa |
Genomic position | DPSCF300009 - 1900777-1901280 | |
RNAseq coverage | 343x (Rank: top 34%) |
Annotation | ||||
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Heliconius | HMEL016792 | 4e-44 | 95.24% |   |
Bombyx | BGIBMGA008088-TA | 1e-43 | 94.05% |   |
Drosophila | snRNP-U1-C-PA | 8e-35 | 95.38% |   |
EBI UniRef50 | UniRef50_F4X6S5 | 6e-38 | 89.74% | U1 small nuclear ribonucleoprotein C n=8 Tax=Coelomata RepID=F4X6S5_ACREC |
NCBI RefSeq | XP_975233.2 | 2e-39 | 84.78% | PREDICTED: similar to CG5454 CG5454-PA [Tribolium castaneum] |
NCBI nr blastp | gi|189234617 | 4e-38 | 84.78% | PREDICTED: similar to CG5454 CG5454-PA [Tribolium castaneum] |
NCBI nr blastx | gi|110758091 | 2e-69 | 78.82% | PREDICTED: hypothetical protein LOC725416 [Apis mellifera] |
Group | ||||
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Gene Ontology | GO:0008270 | 1.1e-21 | zinc ion binding | |
GO:0003676 | 9.1e-12 | nucleic acid binding | ||
KEGG pathway | tca:664125 | 6e-39 |   | |
  | K11095 (SNRPC) | maps-> | Spliceosome | |
InterPro domain | [1-38] IPR013085 | 1.1e-21 | Zinc finger, U1-C type | |
[1-37] IPR003604 | 9.1e-12 | Zinc finger, U1-type | ||
Orthology group | MCL15879 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS208858-TA
ATGCCTAAATATTATTGTGACTATTGTGATACTTACCTTACTCATGACTCACCAAGTGTAAGGAAAACACATTGTACAGGAAGAAAGCATAAGGACAACGTTAAGTTCTATTATCAGAAATGGATGGAAGAACAGGCCCAGCACCTTATCGATGCAACGACTGCTGCATTCAAAGCCGGTAAAATTGCGCAAAATCCATTTGGGGGTCCTAAAGGCGCGAACATTCCGCCTCCGTGGGATCCTTCTGTTATGGGTCCCGGAGGTCCGCGGCCACCCGTACCTACGCCAGGAGGACCTCCTGGAATGATACCTCCTCCAGCTATGGGTCCAGGGGGACCGATGCCTCCTATGATGATGGGTCCTCATGGACCTATGGGACCAATGGGTATGGGTATGGGCATGAGGCCACCAATGATGGGACCATTAATGGGACCTATGGGACCAATGGGTCCTATGGGCCAGATGCGACCACCGTTAATGAATGGACCGCCTATGAATAAATAG
>DPOGS208858-PA
MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGGPKGANIPPPWDPSVMGPGGPRPPVPTPGGPPGMIPPPAMGPGGPMPPMMMGPHGPMGPMGMGMGMRPPMMGPLMGPMGPMGPMGQMRPPLMNGPPMNK-