Monarch geneset OGS2.0

DPOGS209464
TranscriptDPOGS209464-TA1161 bp
ProteinDPOGS209464-PA386 aa
Genomic positionDPSCF300275 + 172590-174372
RNAseq coverage247x (Rank: top 42%)
Annotation
HeliconiusHMEL0045035e-5249.16% 
BombyxBGIBMGA007809-TA8e-1223.08% 
DrosophilanAcRalpha-30D-PE6e-1222.69% 
EBI UniRef50UniRef50_Q0IF572e-1823.91%Neurotransmitter gated ion channel n=4 Tax=Culicidae RepID=Q0IF57_AEDAE
NCBI RefSeqXP_001652010.13e-1923.91%neurotransmitter gated ion channel [Aedes aegypti]
NCBI nr blastpgi|1571135885e-1823.91%neurotransmitter gated ion channel [Aedes aegypti]
NCBI nr blastxgi|1571135883e-1523.10%neurotransmitter gated ion channel [Aedes aegypti]
Group
Gene OntologyGO:00160201.3e-25membrane
GO:00068101.3e-25transport
GO:00052301.3e-25extracellular ligand-gated ion channel activity
GO:00160212.4e-12integral to membrane
GO:00068112.4e-12ion transport
KEGG pathwaydre:3176438e-14 
 K04814 (CHRNB3)maps-> Neuroactive ligand-receptor interaction
InterPro domain[44-242] IPR0062021.3e-25Neurotransmitter-gated ion-channel ligand-binding
[80-241] IPR0062012.4e-12Neurotransmitter-gated ion-channel
Orthology groupMCL34804 Lepidoptera specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS209464-TA
ATGGAACCGACGGCTCGAGGCAGTGTCCTCCGGCATCCAGACTTTAAAATGTTTTCCGAACACAAGTTCATCACGATCATCTTCCTTCTGTACGGTGTAAGGTTGGCAAGTGGCGATTGCAACAACGTGACCCAGCTGTCGACACAGCTGGACCTGCTCCTGGCGGAGTACGAGCGAGCAGCTCCCCCCGCCGCCCCCGCAGACGTAGCGGCGGCCCTGGAAGTGCGACACGCCACCGTCAACGAGAGAGACGCTACCGTCAGGCTGCTCGGCACCATGTACCTGAGCTGGGAGGACAAGCGTCTATCTTGGAACGCGAGCGGTTGGGGCTGCGATAGCACGTTAGTATCAGCGGAGCGTCTGTGGCGGCCCGAGGTGCGCGTGCTGAGCGCGGCCACGGCGGGAGTAGACGGCGGCGCGGGGCCCCGGGCTCGCCTCACCAGCACCGGCCTCGTGTCTTGGCCTGTGCCAGTGGACCTGCTGGCTCCCCTCACGCTCACTCTCAGAGACTGGCCGAACGACAACCAGCAGATCGTGTTCAAATTCGGTTCACAATCACACACCGTGGAAGAGTTGAAACTGACCGTCAGCAAAAAAGAGCGGTCGACCGTATTTGAGTCTGGAACGTGGGAGCTGATGTCGATCCAGAGCGCCGAGGCGAGCTGGCGCCGGCTGGACTCCGAGCACAGCATCTTATCGTGGACATTGAGGCTCCGGCGGCGGGCGGCAGCTCACAGTCTGTCAGCCAGCGCCATCCTCGCCACTGCCGTGTTGCTGCTGGTCGGAGCCGCCCTGCTACCGCCGGAGACACGCGCTCCACTTTGTGCCATAGCCGCTTTAACTGTCTCATTATGCCTCCCTCGCCTGGGAAGTGCGTCATCGGCTCCGCTAGTCATGAGTCTGTTCTGTGTCGTGAGCTGCGTGTCCTCGCTGGCGGCGGGGGGCGCAGCGCTAGTGCTCCGCGTGAGCCGCTGCTCCGCTGCTCCACCACCAGCCCTGCGCAAGTTACTCACCACCGCCTCGACCTTCTGCAATCTTGGTCCTTCAGAGTCGAGCGGTGCGGAGTACAGCGCGTGGGCGGCGGCGGCCCAGCTGCTCGACTATGGACTCCTGACTTCGTTCGGGCTGACGCTCATAGTGGTAGTGTGTCTCTACCTCTAG

Protein sequence:

>DPOGS209464-PA
MEPTARGSVLRHPDFKMFSEHKFITIIFLLYGVRLASGDCNNVTQLSTQLDLLLAEYERAAPPAAPADVAAALEVRHATVNERDATVRLLGTMYLSWEDKRLSWNASGWGCDSTLVSAERLWRPEVRVLSAATAGVDGGAGPRARLTSTGLVSWPVPVDLLAPLTLTLRDWPNDNQQIVFKFGSQSHTVEELKLTVSKKERSTVFESGTWELMSIQSAEASWRRLDSEHSILSWTLRLRRRAAAHSLSASAILATAVLLLVGAALLPPETRAPLCAIAALTVSLCLPRLGSASSAPLVMSLFCVVSCVSSLAAGGAALVLRVSRCSAAPPPALRKLLTTASTFCNLGPSESSGAEYSAWAAAAQLLDYGLLTSFGLTLIVVVCLYL-